plotsr v1.1.1

BUGFIX: Fixed crashing when ti was not defined for any track

plotsr v1.1.0

• Added ti, tt, and ta parameters for plotting overlapping tracks
• Improved performance when reading large BEDGRAPH files
• Bug fixes

plotsr v1.0.0

• Added options to customise individual alignments.
• Bug fixes
• Better input reading

plotsr v0.5.4

• Added nm tag for tracks input. This allows manual setting of space between track and track name.
• Changed how bbox_v is handled. Should not affect functionality.
• Added 'finish message' for when the plot is generated without errors.

plotsr v0.5.3

• Added --itx option for visualising inter-chromosomal rearrangements
• Added --chrname option for providing custom chromosome names for plotting
• Improved performance while reading BED/bedGraph files
• Added bbox_v option in base.cfg file for specifying legend position when using the -v option
• Changed files in the example folder. Now example plot can be generated without running other methods
• Updated README
• BUG Fixes

Plotsr v0.5.2

Fixed bug resulting in crash when using more than 10 genomes.

plotsr v0.5.1

The --rtr option now selects all syntenic regions within the selected view as well.

plotsr v0.5

Added --rtr parameter to allow visualisation of all SRs within the view when using --reg

plotsr v0.4

• Added reading and plotting of GFF file
• File containing chromosome lengths can be parsed instead of genome fasta. This improves performace.
• Some more customisation parameters.
• Fewer warning messages.
• Cleaning up.

Added setting to manage chromosome spacing

Added the exmar base.cfg parameter that can be used to control the spacing between homologous groups