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add MiloDE - #1001

Merged

Zethson merged 11 commits into

mainfrom

feat/milode-de-nhoods

May 28, 2026

Merged

add MiloDE#1001
Zethson merged 11 commits into
mainfrom
feat/milode-de-nhoods

Commits on May 27, 2026
- milo: add de_nhoods (miloDE) for per-neighbourhood DE testing
  
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  36c1fae
- docs: add docstring preview for milo.de_nhoods
  
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- milo: de_nhoods returns long DataFrame, matching pertpy DE convention
  
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- docs: add example previews for milo.de_nhoods plotting recipes
  
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  61d319e
- milo: add plot_de_nhood_graph for one-line per-gene DE visualization
  
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  86b8904
- docs: bump tutorials submodule for miloDE section
  
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  601a10d
- milo: silence per-nhood pydeseq2 stdout in de_nhoods + bump tutorial
  
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Commits on May 28, 2026
- docs: bump tutorials submodule to kang_2018-based miloDE example
  
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  c5aa93f
- milo: float64 p-values in de_nhoods + summarize skipped nhoods once
  
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  38b5a37
- docs: point tutorials submodule at pertpy-tutorials main
  
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  350a0ed
- docs: regenerate de_nhoods preview with kang_2018 / ISG15
  
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  b381e46