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Pull requests: scverse/squidpy

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Pull requests list

Functions to QC histopathology images
#1036 opened Sep 14, 2025 by timtreis Loading…
1
Use the correct image for scatter plots with alternate spatial bases
#1032 opened Sep 8, 2025 by obriencshl Loading…
3
Fix for spatial_neighbors breaks when transform='spectral'
#1028 opened Aug 24, 2025 by selmanozleyen Loading…
1
@selmanozleyen
7
Add COZI to nhood_enrichment()
#1023 opened Aug 12, 2025 by chiarasch Loading…
1 task done
3
Add SpatialLeiden as clustering method
#1019 opened Jul 28, 2025 by melocery Loading…
1
2
Adding Benchmarks benchmark enhancement ✨ New feature or request
#1016 opened Jul 10, 2025 by selmanozleyen Loading…
@flying-sheep @selmanozleyen
5
Run notebooks in CI
#1013 opened Jun 30, 2025 by selmanozleyen Loading…
1
10
sq.pp.filter_cells for SpatialData
#1011 opened Jun 18, 2025 by selmanozleyen Loading…
1 task done
1
1
[pre-commit.ci] pre-commit autoupdate
#997 opened May 5, 2025 by pre-commit-ci bot Loading…
Update template to v0.5.0
#983 opened Apr 2, 2025 by scverse-bot Loading…
[EXPERIMENTAL]: Integrate cp-measure enhancement ✨ New feature or request image 🔬 release-added sdata compat 🌌 squidpy2.0 Everything releated to a Squidpy 2.0 release
#982 opened Mar 28, 2025 by timtreis Loading…
1
Change niche flavor to cellcharter_simple and default distance = 3
#978 opened Mar 24, 2025 by marcovarrone Loading…
1
1
Add filter function that subsets the entire object
#967 opened Mar 4, 2025 by timtreis • Draft
1
@selmanozleyen
1
Sliding window improvements
#931 opened Dec 25, 2024 by mossishahi • Draft
9
Add method to calculate embeddings for variable by distance aggregation feature PR introduces a new feature squidpy2.0 Everything releated to a Squidpy 2.0 release
#807 opened Mar 4, 2024 by LLehner Loading…
2 tasks
4
fix the bug of relative coordinates
#572 opened Jun 17, 2022 by JiaShun-Xiao Loading…
8
ProTip! Updated in the last three days: updated:>2025-09-13.