Fix image paths and add dupRadar benchmark comparisons#15
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…ark plots Use import.meta.env.BASE_URL instead of hardcoded /RustQC/ prefix for image paths in outputs/dupradar.mdx and outputs/rseqc.mdx, matching the pattern already used in index.mdx. This fixes broken images when the site is deployed with a different base path (e.g., on Netlify). Also add side-by-side dupRadar plot comparisons to the featureCounts benchmark page, demonstrating that identical gene-level counts produce identical downstream visualizations. https://claude.ai/code/session_01QMMExQTjDXR5jHHYQvr8NR
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Convert dupradar.md and featurecounts.md to .mdx so image src attributes can use import.meta.env.BASE_URL, ensuring images resolve correctly on the deployed site regardless of the base path. Also convert inline style strings to JSX objects as required by MDX. https://claude.ai/code/session_01QMMExQTjDXR5jHHYQvr8NR
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Summary
This PR improves documentation by fixing hardcoded image paths to use dynamic base URLs and adds visual comparisons of dupRadar outputs between R and RustQC implementations.
Key Changes
Fixed image path handling: Updated
rseqc.mdxanddupradar.mdxto use dynamicbaseURL fromimport.meta.env.BASE_URLinstead of hardcoded/RustQC/paths. This ensures images load correctly regardless of deployment base path.Added dupRadar benchmark comparisons: Expanded
featurecounts.mdwith a new "Side-by-side plots" section that visually compares R dupRadar output against RustQC output for three plot types:Improved documentation structure: Used CSS Grid layout for side-by-side image comparisons with proper spacing and captions, making it easier to verify that RustQC produces identical results to the reference R implementation.
Implementation Details
grid-template-columns: 1fr 1frfor equal-width columnshttps://claude.ai/code/session_01QMMExQTjDXR5jHHYQvr8NR