tcdo-pg-tools

Commandline tools to support proteogenomics analyses at MSK TCDO and beyond

Features

Merging RNA fusions across multiple samples which were called by CTAT-LR-Fusion or processed using FusionInspector. Currently also needs a metadata sheet from our internal isabl_utils package.
calculation of AA seq coverage across multiple enzymes using fragpipe results

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

Name		Name	Last commit message	Last commit date
Latest commit History 26 Commits
.github		.github
docs		docs
src/tcdo_pg_tools		src/tcdo_pg_tools
tests		tests
.editorconfig		.editorconfig
.readthedocs.yaml		.readthedocs.yaml
.travis.yml		.travis.yml
AUTHORS.rst		AUTHORS.rst
CODE_OF_CONDUCT.rst		CODE_OF_CONDUCT.rst
CONTRIBUTING.rst		CONTRIBUTING.rst
Dockerfile		Dockerfile
HISTORY.rst		HISTORY.rst
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
Makefile		Makefile
README.rst		README.rst
pyproject.toml		pyproject.toml
requirements.txt		requirements.txt
requirements_dev.txt		requirements_dev.txt
ruff.toml		ruff.toml
tox.ini		tox.ini