Complete docs and code tests.#37
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Pin CPU torch in CI and install torch_scatter/torch_sparse from the matching PyG wheel index so import smoke can load all registered strategies.\n\nRun ruff format across the repository to satisfy the existing format check.\n\nCo-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
…tion and LinkTask - Add `bench_paper_grid.sh` script to perform a comprehensive benchmark sweep across various datasets, shot numbers, prompt types, and pretraining methods. - Extend `bootstrap_excel_full.py` to generate templates for LinkTask results, including a new row index for LinkTask metrics. - Introduce `export_final_matrices.py` to export benchmark results into a structured report format. - Update `merge_result_excels.py` to handle merging of LinkTask results alongside Node and Graph results. - Modify `pretrain_paper_grid.sh` to clarify its role in the paper-scope benchmark experiment. - Add unit tests in `test_link_task.py` to validate LinkTask functionality and ensure proper handling of supported and unsupported prompts.
Regenerate results/link-prediction-gcn/ from the heavy AMLT rerun (epochs=50, task_num=3 folds, All-in-one caps 128/1/24), replacing the earlier under-fit fast report. Improvements vs fast run: - Degenerate AUROC=0.5 cells: 43 -> 13 (epochs 10->50 fixed under-fitting; remaining 13 are genuine constant-predictor cases on PROTEINS/MUTAG). - Cells with real std: 0 -> 2901 / 2912 (task_num 1->3 yields mean+/-std). - AUROC median 0.6482 -> 0.6719, max 0.9507; full coverage (2912 combos). Also prune empty Graph/Node/Link placeholder matrices that were never populated by the link-only sweep, and add a Run configuration note to the report README. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Export assets/logo.excalidraw and assets/prog-v2-pipeline-draft.excalidraw to images and replace assets/logo.jpg and assets/prog-pipeline.jpg. README references are unchanged. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
… Learning' Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
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