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@sifrimlab

LMIB

KU Leuven research group that aims to develop novel computational methodologies for data fusion and pattern recognition.

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  1. ST-nextflow-pipeline Public

    This repository contains the entire codebase necessary to pilot STAPLE, an automated end-to-end pipeline that processes Spatial Transcriptomics datasets.

    Python 1

  2. enteric_neuron_tools Public

    This repository contains both a script and a gui to process .czi images and count and segment enteric neurons that are visualized on one of the channels.

    Python

  3. pyxelperfect Public

    Collection of image-processing tools for bioinformatic applications

    Python 5

Repositories

Showing 10 of 15 repositories
  • sifrimlab.github.io Public

    Source code for LMIB website

    HTML 0 BSD-3-Clause 0 0 1 Updated Mar 10, 2025
  • multi-verse Public
    Python 2 0 0 0 Updated Jan 24, 2025
  • enteric_neuron_tools Public

    This repository contains both a script and a gui to process .czi images and count and segment enteric neurons that are visualized on one of the channels.

    Python 0 GPL-3.0 0 0 0 Updated Oct 28, 2024
  • Concrete-Geneselection Public
    Python 0 0 0 0 Updated Sep 1, 2024
  • pyxelperfect Public

    Collection of image-processing tools for bioinformatic applications

    Python 5 GPL-3.0 0 0 0 Updated Aug 9, 2024
  • Piol_motor_neuron Public

    This is a collection of scripts and code used to reproduce the results and figures in the upcoming Piol, et al. publication

    HTML 0 GPL-3.0 0 0 0 Updated Aug 2, 2024
  • pyrodsCLI Public
    Python 0 0 0 0 Updated Feb 1, 2024
  • ibp-human-gut-cell-atlas-analysis Public
    Jupyter Notebook 0 0 0 0 Updated Dec 23, 2023
  • ST-nextflow-pipeline Public

    This repository contains the entire codebase necessary to pilot STAPLE, an automated end-to-end pipeline that processes Spatial Transcriptomics datasets.

    Python 1 MIT 0 0 0 Updated Oct 5, 2023
  • LatInt Public
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Nov 25, 2022
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