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SN OntologyTerm update #349

Merged
merged 36 commits into from
Mar 4, 2025
Merged

SN OntologyTerm update #349

merged 36 commits into from
Mar 4, 2025

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sarahgonicholson
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@sarahgonicholson sarahgonicholson commented Feb 18, 2025 •
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  • Change uberon_id in Tissue from a string to a linkTo to OntologyTerm
  • Add upgrader for tissue
  • Update File sample_summary to include tissue information from OntologyTerm

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@sarahgonicholson
add ontology item
19a0370
@sarahgonicholson
ontology insert
4867e97
@sarahgonicholson
update ontology term schema
175fbb2
@sarahgonicholson
role back tissue link
fbcf49d
@sarahgonicholson
Fix typo
c4e3706
@sarahgonicholson
Merge branch 'main' into sn_ontology
9bb0061
@sarahgonicholson
update changelog
f99beb5
@sarahgonicholson
fix treatment link
ed350a7
@sarahgonicholson
Merge up-to-date with main
723e5b0
@sarahgonicholson
Merge up-to-date with main
19d04b2
@sarahgonicholson
Merge main
0e82f71
@sarahgonicholson
Add ontology and rename grouping_term
f1cc95c
@sarahgonicholson
u
e4be91f
@sarahgonicholson
Merge main
e46a4eb
@sarahgonicholson
Add ot display_title
69ced43
@sarahgonicholson
Fix issues with top grouping term
57659df
@sarahgonicholson
test for top_grouping_term
1e0f075
@sarahgonicholson
Add sample_summary file tests
efd5805
@sarahgonicholson
Merge branch 'main' into sn_ontology
b8c42c5
@sarahgonicholson
Fix tests
922d8bd
@sarahgonicholson
Just update uberon_id linkto
ffb15db
@sarahgonicholson
Fix insert
03c7712
@sarahgonicholson
Add upgrader for uberon_id
0a3b26d
@sarahgonicholson
Merge branch 'main' into sn_ontology_2
970a16d
@sarahgonicholson
Merge branch 'main' into sn_ontology_2
f1566fe
@sarahgonicholson
Update changelog
6d83b9a
@sarahgonicholson
add brain ontology term
9e58423
@sarahgonicholson sarahgonicholson merged commit 6fe43b3 into main Mar 4, 2025
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@aschroed aschroed aschroed left review comments

@willronchetti willronchetti Awaiting requested review from willronchetti

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@sarahgonicholson @aschroed