Merge pull request #5 from snakemake/johanneskoester-patch-1

chore: update to stable snakemake

Author: jakevc

pyproject.toml

@@ -19,7 +19,7 @@ black = "^23.11.0"
 flake8 = "^6.1.0"
 coverage = "^7.3.2"
 pytest = "^7.4.3"
-snakemake = {git = "https://github.com/snakemake/snakemake.git"}
+snakemake = "^8.20.1"
 snakemake-storage-plugin-s3 = "^0.2.7"
 
 [tool.coverage.run]

tests/__init__.py

@@ -26,10 +26,8 @@ def get_assume_shared_fs(self) -> bool:
 
     def get_remote_execution_settings(
         self,
-    ) -> snakemake.settings.RemoteExecutionSettings:
-        return snakemake.settings.RemoteExecutionSettings(
+    ) -> snakemake.settings.types.RemoteExecutionSettings:
+        return snakemake.settings.types.RemoteExecutionSettings(
             seconds_between_status_checks=5,
             envvars=self.get_envvars(),
-            # TODO remove once we have switched to stable snakemake for dev
-            container_image="snakemake/snakemake:latest",
         )