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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.4k 586

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 219 191

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 161 29

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    58 12

  5. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 32 10

  6. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 31 24

Repositories

Showing 10 of 59 repositories
  • snakemake-storage-plugin-xrootd Public

    A Snakemake storage plugin for handling input and output via XRootD

    snakemake/snakemake-storage-plugin-xrootd’s past year of commit activity
    Python 1 MIT 3 2 1 Updated Mar 25, 2025
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 31 MIT 24 31 7 Updated Mar 24, 2025
  • snakemake-storage-plugin-irods Public

    Snakemake storage plugin for handling input and output on iRODS

    snakemake/snakemake-storage-plugin-irods’s past year of commit activity
    Python 0 MIT 3 1 0 Updated Mar 24, 2025
  • snakemake-storage-plugin-sftp Public

    A Snakemake storage plugin that handles files on an SFTP server.

    snakemake/snakemake-storage-plugin-sftp’s past year of commit activity
    Python 0 MIT 3 1 0 Updated Mar 24, 2025
  • snakemake-storage-plugin-ftp Public

    A Snakemake storage plugin that handles files and directories on an FTP server

    snakemake/snakemake-storage-plugin-ftp’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 24, 2025
  • snakemake-storage-plugin-zenodo Public

    A Snakemake storage plugin for zenodo

    snakemake/snakemake-storage-plugin-zenodo’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 24, 2025
  • snakemake-storage-plugin-webdav Public

    A Snakemake storage plugin for handling input and output via webdav

    snakemake/snakemake-storage-plugin-webdav’s past year of commit activity
    Python 0 MIT 2 1 0 Updated Mar 24, 2025
  • snakemake-storage-plugin-gcs Public

    A Snakemake storage plugin for Google Cloud Storage

    snakemake/snakemake-storage-plugin-gcs’s past year of commit activity
    Python 4 MIT 6 0 2 Updated Mar 24, 2025
  • snakemake-storage-plugin-apd Public

    Snakemake storage plugin for use with the LHCb apd package

    snakemake/snakemake-storage-plugin-apd’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 24, 2025
  • snakemake-storage-plugin-azure Public

    Snakemake storage plugin for Azure Blob Storage

    snakemake/snakemake-storage-plugin-azure’s past year of commit activity
    Python 0 MIT 3 0 0 Updated Mar 24, 2025
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