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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.6k 607

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 232 197

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 176 32

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    60 15

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 41 37

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 35 10

Repositories

Showing 10 of 62 repositories
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,587 MIT 607 1,125 (1 issue needs help) 80 Updated Oct 2, 2025
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 232 197 14 26 Updated Oct 1, 2025
  • mastodon-release-post-action Public

    GitHub action to facilitate posting release notes on Mastodon

    snakemake/mastodon-release-post-action’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Oct 2, 2025
  • snakemake.github.io Public

    Snakemake homepage

    snakemake/snakemake.github.io’s past year of commit activity
    HTML 3 MIT 3 0 1 Updated Oct 1, 2025
  • snakemake-interface-software-deployment-plugins Public

    A stable interface for Snakemake software deployment plugins

    snakemake/snakemake-interface-software-deployment-plugins’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Oct 1, 2025
  • snakemake-interface-common Public

    Common functions and classes for Snakemake and its plugins

    snakemake/snakemake-interface-common’s past year of commit activity
    Python 0 MIT 5 3 2 Updated Sep 30, 2025
  • snakemake-lang-vscode-plugin Public

    Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.

    snakemake/snakemake-lang-vscode-plugin’s past year of commit activity
    TypeScript 21 MIT 17 9 1 Updated Sep 30, 2025
  • snakemake-interface-executor-plugins Public

    This package provides a stable interface for interactions between Snakemake and its executor plugins.

    snakemake/snakemake-interface-executor-plugins’s past year of commit activity
    Python 12 MIT 13 9 2 Updated Sep 30, 2025
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog’s past year of commit activity
    Python 35 MIT 10 5 0 Updated Sep 29, 2025
  • snakedeploy Public

    deploy a snakemake pipeline directly from version control (under development)

    snakemake/snakedeploy’s past year of commit activity
    Python 25 MPL-2.0 11 15 3 Updated Sep 29, 2025
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