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1,046 Open 701 Closed
1,046 Open 701 Closed
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Issues list

snakemake --cleanup-metadata appears broken in 8.24.0 and 8.25.2 bug Something isn't working
#3193 opened Nov 8, 2024 by daknuett
AttributeError when using existing conda environment with checkpoint bug Something isn't working
#3192 opened Nov 7, 2024 by johnne
locally detected cores determine remote max thread level bug Something isn't working
#3191 opened Nov 7, 2024 by cmeesters
Params unbound in Bash scripts bug Something isn't working
#3187 opened Nov 6, 2024 by mbhall88
Global container image specification overridden by module import bug Something isn't working
#3186 opened Nov 6, 2024 by laf070810
rust-script >= 0.23.0 fails with current version of snakemake bug Something isn't working
#3183 opened Nov 4, 2024 by jackerschott
Add more details to log lines like "Finished job 7." enhancement New feature or request
#3178 opened Oct 31, 2024 by corneliusroemer
Helper function for turning Python filenames into module names (or vice versa) enhancement New feature or request
#3177 opened Oct 30, 2024 by edbennett
Using snakemake -q all hides SLURM error messages bug Something isn't working
#3173 opened Oct 28, 2024 by peterjc
1
Clarify default behavior of snakemake without "--cores" option enhancement New feature or request
#3167 opened Oct 23, 2024 by fhg-isi
More specific recommendations in Raise CreateCondaEnvironmentException: Conda must be version 24.7.1 or later, enhancement New feature or request
#3163 opened Oct 22, 2024 by tito-abbo
5
Check for updated inputs while executing DAG enhancement New feature or request
#3161 opened Oct 21, 2024 by WeatherGod
1
Using snakemake -q all does not silence stdout and stderr from rules bug Something isn't working
#3152 opened Oct 17, 2024 by peterjc
3
Callbacks from DAG .execute_workflow() needed for progress bar enhancement New feature or request
#3151 opened Oct 17, 2024 by peterjc
4
Sequential execution in one script of parallely defined rules. enhancement New feature or request
#3143 opened Oct 15, 2024 by gatoniel
--generate-unit-tests will raise error in 8.20.1 or newer version bug Something isn't working
#3137 opened Oct 13, 2024 by jiangyun-fun
1
Question: Can you make an execute a snakemake workflow in pure python?
#3136 opened Oct 11, 2024 by harrymatthews50
Running Snakemake --touch gives PulpSolverError bug Something isn't working
#3128 opened Oct 8, 2024 by tbenavi1
4
Support standard Python virtual env. for rules enhancement New feature or request
#3124 opened Oct 7, 2024 by ccoulombe
Announcement: Snakemake hackathon 2025 at CERN, call for participants! enhancement New feature or request
#3123 opened Oct 7, 2024 by johanneskoester
1
Remove temporary paramiko version constraint enhancement New feature or request
#3120 opened Oct 7, 2024 by coderabbitai bot
1
Remove temporary paramiko version constraint enhancement New feature or request
#3119 opened Oct 7, 2024 by coderabbitai bot
snakemake --dag fails if there are ambiguities because workflow.execution_settings is None bug Something isn't working
#3118 opened Oct 7, 2024 by tesujimath
1
mamba 2.0.0 doesn't support the --no-default-packages option bug Something isn't working
#3108 opened Sep 30, 2024 by edbennett
3
Be able to depend on individual dataset(s) within an HDF5 file enhancement New feature or request
#3106 opened Sep 26, 2024 by edbennett
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