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[STY] fix matlab markup in Concatenation.md #10

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[STY] fix matlab markup in Concatenation.md #10

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23 changes: 15 additions & 8 deletions docs/wikibooks/Concatenation.md
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Original file line number Diff line number Diff line change
Expand Up @@ -33,14 +33,19 @@ you need to add to these onsets the length of sessions before the
session. For example, suppose you have 3 sessions and corresponding
onsets 1-3, and each session has 60, 55, 44 volume scans respectively:

\<syntaxhighlight lang=\"matlab\"\> scans = \[60 55 40\];
```matlab
scans = [60 55 40];

% If onsets are in scans onsets_concat = \[onsets1,onsets2 + 60,
onsets3 + 115\];
% If onsets are in scans
onsets_concat = [onsets1,onsets2 + 60, onsets3 + 115];

% If onsets are in seconds TR = 2; % Replace with the actual value
according to your scanning protocol onsets_concat = \[onsets1,onsets2 +
60\*TR, onsets3 + 115\*TR\]; \</syntaxhighlight\>Other regressors (e.g.
% If onsets are in seconds
TR = 2;
% Replace with the actual value according to your scanning protocol
onsets_concat = [onsets1,onsets2 + 60*TR, onsets3 + 115*TR];
```

Other regressors (e.g.
head motion regressors) should be similarly concatenated.

### Specifying the concatenated GLM
Expand All @@ -64,8 +69,10 @@ Run the following code in the main Matlab window. Again, \'scans\' here
denotes the number of volumes in each session in the original
timeseries.

\<syntaxhighlight lang=\"matlab\"\> scans = \[60 55 40\];
spm_fmri_concatenate(\'SPM.mat\', scans); \</syntaxhighlight\>
```matlab
scans = [60 55 40];
spm_fmri_concatenate('SPM.mat', scans);
```

The adjusted GLM (SPM.mat) will replace the GLM you specified before
(its copy will be saved as SPM_backup.mat). Now you can estimate the GLM
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