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CompatHelper: bump compat for LazyArrays to 2 for package turing, (drop existing compat) #200
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| name: Test Models | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - main | |
| pull_request: | |
| branches: | |
| - master | |
| - main | |
| jobs: | |
| test-turing: | |
| name: Test Turing Models | |
| runs-on: ubuntu-latest | |
| env: | |
| JULIA_NUM_THREADS: "auto" | |
| strategy: | |
| matrix: | |
| jl-file: [ | |
| "01-predictive_checks.jl", | |
| "02-linear_regression-kidiq.jl", | |
| "03-logistic_regression-wells.jl", | |
| "04-ordinal_regression-esoph.jl", | |
| "05-poisson_regression-roaches.jl", | |
| "06-robust_linear_regression-duncan.jl", | |
| #"07-robust_beta_binomial_regression-wells.jl", # FIXME: broken | |
| #"08-robust_robit_regression-wells.jl", # FIXME: broken | |
| "09-robust_negative_binomial_regression-roaches.jl", | |
| "10-robust_zero_inflated_regression-negative_binomial-roaches.jl", | |
| "10-robust_zero_inflated_regression-poisson-roaches.jl", | |
| "11-sparse_horseshoe.jl", | |
| "12-sparse_horseshoe_p.jl", | |
| "13-sparse_finnish_horseshoe.jl", | |
| "14-sparse_r2d2.jl", | |
| "15-hierarchical_varying_intercept-cheese.jl", | |
| "15-hierarchical_varying_intercept-non_centered-cheese.jl", | |
| "16-hierarchical_varying_intercept_slope-cheese.jl", | |
| #"17-model_comparison-roaches.jl", # FIXME: broken upstream in ParetoSmooth.jl | |
| ] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Install Nix | |
| uses: DeterminateSystems/nix-installer-action@v13 | |
| - name: Cache Nix artifacts | |
| uses: DeterminateSystems/magic-nix-cache-action@v7 | |
| - name: Test ${{ matrix.jl-file }} | |
| run: | | |
| nix develop -L . --command bash -c "julia -e 'using Pkg; Pkg.instantiate()'" | |
| nix develop -L . --command bash -c "julia turing/${{ matrix.jl-file }}" | |
| test-stan: | |
| name: Test Stan Models | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| stan: | |
| [ | |
| { | |
| model: "01-predictive_checks-posterior", | |
| data: "coin_flip.data.json", | |
| }, | |
| { | |
| model: "01-predictive_checks-prior", | |
| data: "coin_flip.data.json", | |
| }, | |
| { model: "02-linear_regression-QR", data: "kidiq.data.json" }, | |
| { | |
| model: "02-linear_regression-optimized", | |
| data: "kidiq.data.json", | |
| }, | |
| { model: "02-linear_regression", data: "kidiq.data.json" }, | |
| { | |
| model: "03-logistic_regression-optimized", | |
| data: "wells.data.json", | |
| }, | |
| { model: "03-logistic_regression", data: "wells.data.json" }, | |
| { | |
| model: "04-ordinal_regression-optimized", | |
| data: "esoph.data.json", | |
| }, | |
| { model: "04-ordinal_regression", data: "esoph.data.json" }, | |
| { | |
| model: "05-poisson_regression-optimized", | |
| data: "roaches.data.json", | |
| }, | |
| { model: "05-poisson_regression", data: "roaches.data.json" }, | |
| { model: "06-robust_linear_regression", data: "kidiq.data.json" }, | |
| { | |
| model: "07-robust_beta_binomial_regression", | |
| data: "wells.data.json", | |
| }, | |
| { model: "08-robust_robit_regression", data: "wells.data.json" }, | |
| { | |
| model: "09-robust_negative_binomial_regression-optimized", | |
| data: "roaches.data.json", | |
| }, | |
| { | |
| model: "09-robust_negative_binomial_regression", | |
| data: "roaches.data.json", | |
| }, | |
| { | |
| model: "10-robust_zero_inflated_regression-negative_binomial-optimized", | |
| data: "roaches.data.json", | |
| }, | |
| { | |
| model: "10-robust_zero_inflated_regression-negative_binomial", | |
| data: "roaches.data.json", | |
| }, | |
| { | |
| model: "10-robust_zero_inflated_regression-poisson-optimized", | |
| data: "roaches.data.json", | |
| }, | |
| { | |
| model: "10-robust_zero_inflated_regression-poisson", | |
| data: "roaches.data.json", | |
| }, | |
| { | |
| model: "11-sparse_horseshoe_regression", | |
| data: "sparse_regression.data.json", | |
| }, | |
| { | |
| model: "12-sparse_horseshoe_p_regression", | |
| data: "sparse_regression.data.json", | |
| }, | |
| { | |
| model: "13-sparse_finnish_horseshoe_regression", | |
| data: "sparse_regression.data.json", | |
| }, | |
| { | |
| model: "14-sparse_r2d2_regression", | |
| data: "sparse_regression.data.json", | |
| }, | |
| { | |
| model: "15-hierarchical_varying_intercept-non_centered", | |
| data: "cheese.data.json", | |
| }, | |
| { | |
| model: "15-hierarchical_varying_intercept", | |
| data: "cheese.data.json", | |
| }, | |
| { | |
| model: "16-hierarchical_varying_intercept_slope", | |
| data: "cheese.data.json", | |
| }, | |
| { | |
| model: "17-model_comparison-negative_binomial", | |
| data: "roaches.data.json", | |
| }, | |
| { model: "17-model_comparison-poisson", data: "roaches.data.json" }, | |
| { | |
| model: "17-model_comparison-zero_inflated-negative_binomial", | |
| data: "roaches.data.json", | |
| }, | |
| { | |
| model: "17-model_comparison-zero_inflated-poisson", | |
| data: "roaches.data.json", | |
| }, | |
| ] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Install Nix | |
| uses: DeterminateSystems/nix-installer-action@v13 | |
| - name: Cache Nix artifacts | |
| uses: DeterminateSystems/magic-nix-cache-action@v7 | |
| - name: Test ${{ matrix.stan.model }} | |
| run: | | |
| echo "Compiling: ${{ matrix.stan.model }}" | |
| nix develop -L . --command bash -c "stan stan/${{ matrix.stan.model }}" | |
| nix develop -L . --command bash -c "stan/${{ matrix.stan.model }} sample num_chains=4 data file=stan/${{ matrix.stan.data }}" | |
| nix develop -L . --command bash -c "stansummary output_*.csv" |