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seanlawseanlaw
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Updated pytest flags to report skips and additional summary
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‎test.sh

Lines changed: 30 additions & 30 deletions
Original file line numberDiff line numberDiff line change
@@ -108,7 +108,7 @@ test_custom()
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echo "Custom Test: $i / $max_iter"
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for testfile in "${custom_testfiles[@]}"
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do
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pytest -x -W ignore::DeprecationWarning $testfile
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pytest -rsx -W ignore::DeprecationWarning $testfile
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check_errs $?
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done
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done
@@ -122,66 +122,66 @@ test_unit()
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echo "Testing Numba JIT Compiled Functions"
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_gpu_stump.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_core.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_core.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_config.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_config.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_stump.py tests/test_mstump.py tests/test_stumpi.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_stump.py tests/test_mstump.py tests/test_stumpi.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_scrump.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_scrump.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_stumped.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_stumped.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_mstumped.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_mstumped.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_ostinato.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_ostinato.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_gpu_ostinato.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_gpu_ostinato.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_mpdist.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_mpdist.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_motifs.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_motifs.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_mmotifs.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_mmotifs.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_gpu_mpdist.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_gpu_mpdist.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_snippets.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_snippets.py
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check_errs $?
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_gpu_stimp.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_stimp.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_stimp.py
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check_errs $?
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# aamp
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_gpu_aamp.py
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check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aamp.py tests/test_maamp.py tests/test_scraamp.py tests/test_aampi.py
158+
pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aamp.py tests/test_maamp.py tests/test_scraamp.py tests/test_aampi.py
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check_errs $?
160-
pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_scraamp.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_scraamp.py
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check_errs $?
162-
pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aamped.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aamped.py
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check_errs $?
164-
pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_maamped.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_maamped.py
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check_errs $?
166-
pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aamp_ostinato.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aamp_ostinato.py
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check_errs $?
168-
pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_gpu_aamp_ostinato.py
168+
pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_gpu_aamp_ostinato.py
169169
check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aampdist.py
170+
pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aampdist.py
171171
check_errs $?
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pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aamp_motifs.py
172+
pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aamp_motifs.py
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check_errs $?
174-
pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aamp_mmotifs.py
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pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aamp_mmotifs.py
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check_errs $?
176-
pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_gpu_aampdist.py
176+
pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_gpu_aampdist.py
177177
check_errs $?
178-
pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aampdist_snippets.py
178+
pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aampdist_snippets.py
179179
check_errs $?
180180
pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_gpu_aamp_stimp.py
181181
check_errs $?
182-
pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aamp_stimp.py
182+
pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests/test_aamp_stimp.py
183183
check_errs $?
184-
pytest -x -W ignore::DeprecationWarning tests/test_non_normalized_decorator.py
184+
pytest -rsx -W ignore::DeprecationWarning tests/test_non_normalized_decorator.py
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check_errs $?
186186
}
187187

@@ -192,14 +192,14 @@ test_coverage()
192192
export NUMBA_ENABLE_CUDASIM=1
193193

194194
# echo "Testing Python Functions"
195-
# pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests
195+
# pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning tests
196196
# check_errs $?
197197

198198
echo "Testing Code Coverage"
199199
coverage erase
200200
for testfile in tests/test_*.py
201201
do
202-
coverage run --append --source=. -m pytest -x -W ignore::RuntimeWarning -W ignore::DeprecationWarning $testfile
202+
coverage run --append --source=. -m pytest -rsx -W ignore::RuntimeWarning -W ignore::DeprecationWarning $testfile
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check_errs $?
204204
done
205205
coverage report -m --skip-covered --omit=setup.py,docstring.py

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