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cellrank fix?
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Signed-off-by: zethson <[email protected]>
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Zethson committed Nov 28, 2024
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4 changes: 2 additions & 2 deletions .github/workflows/run_notebooks.yml
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Expand Up @@ -32,10 +32,10 @@ jobs:
run: pip install uv

- name: Install ehrapy and additional dependencies
run: uv pip install --system . nbconvert ipykernel
run: uv pip install --system . cellrank nbconvert ipykernel

- name: Install scvelo from Github
run: uv pip install --system git+https://github.com/theislab/scvelo.git git+https://github.com/theislab/cellrank.git
run: uv pip install --system git+https://github.com/theislab/scvelo.git

- name: Run ${{ matrix.notebook }} Notebook
run: jupyter nbconvert --to notebook --execute ${{ matrix.notebook }}

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