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add scCello
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KatarinaYuan committed Feb 4, 2025
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- model: scCello
paper:
type: peer_reviewed
text: '[Yuan, Xinyu, et al. 2024]'(https://openreview.net/pdf?id=aeYNVtTo7o)
url: https://openreview.net/pdf?id=aeYNVtTo7o
code:
type: reproducible
text: "\x9F\x9B\_ï¸\x8FGithub](https://github.com/DeepGraphLearning/scCello)"
url: https://github.com/DeepGraphLearning/scCello
omic_modalities: scRNA-seq
pre_training_dataset: 23M / cross-tissue, human ([CELLxGENE](https://cellxgene.cziscience.com/))
input_embedding: 'Ordering: rank-based'
architecture: Encoder
ssl_tasks: 'Multi-level pre-training: MLM with CE loss for gene level modeling; an ontologybased cell-type coherence loss for intra-cellular level modeling; a relational alignment loss to inject cell-type lineage from cell ontology graph for inter-cellular level modeling'
supervised_tasks: 'fine-tuning tasks: cell type classification; zero-shot tasks: cell type annotation, marker gene prediction, novel cell type prediction, cancer drug prediction'

- model: scGREAT
paper:
type: peer_reviewed
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