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Fixed Document Generation Error and Added the Models #84

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6 changes: 3 additions & 3 deletions .github/workflows/document-generation.yml
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ jobs:

# Setup Python for notebook conversion
- name: Set up Python
uses: actions/setup-python@v2
uses: actions/setup-python@v4
with:
python-version: '3.x'

Expand Down Expand Up @@ -54,13 +54,13 @@ jobs:

# Upload artifacts
- name: Upload PDF artifacts
uses: actions/upload-artifact@v3
uses: actions/upload-artifact@v4
with:
name: pdfs
path: _pages/*.pdf

- name: Upload Notebook artifacts
uses: actions/upload-artifact@v3
uses: actions/upload-artifact@v4
with:
name: notebooks
path: _pages/*.ipynb
35 changes: 35 additions & 0 deletions _data/single-cell-transformers.yml
Original file line number Diff line number Diff line change
@@ -1,3 +1,38 @@
- model: scGPT-spatial
paper:
type: preprint
text: '[Chloe Wang, et al. 2024](https://www.biorxiv.org/content/10.1101/2025.02.05.636714v1.full.pdf)'
url: https://www.biorxiv.org/content/10.1101/2025.02.05.636714v1.full.pdf
code:
type: reproducible
text: "[ð\x9F\x9B\_ï¸\x8FGithub](https://github.com/bowang-lab/scGPT-spatial)"
url: https://github.com/bowang-lab/scGPT-spatial
omic_modalities: '-'
pre_training_dataset: '-'
input_embedding: '-'
architecture: '-'
ssl_tasks: '-'
supervised_tasks: '-'


- model: MAMMAL - Molecular Aligned Multi-Modal Architecture and Language
paper:
type: preprint
text: '[Yoel Shoshan, et al. 2024](https://arxiv.org/pdf/2410.22367)'
url: https://arxiv.org/pdf/2410.22367
code:
type: reproducible
text: "[ð\x9F\x9B\_ï¸\x8FGithub](https://github.com/BiomedSciAI/biomed-multi-alignment)"
url: https://github.com/BiomedSciAI/biomed-multi-alignment
omic_modalities: '-'
pre_training_dataset: '-'
input_embedding: '-'
architecture: '-'
ssl_tasks: '-'
supervised_tasks: '-'



- model: scCello
paper:
type: peer_reviewed
Expand Down