pushing working parser

[diyorg07]

No description provided.

[thomas-robinson]

@diyorzakirov07 please use doxygen-style python comments and include at least a \brief section for all functions.

[thomas-robinson]

Use doxygen comments, preferably the ## style suggested here

[thomas-robinson]

There is a typo in "listed"

[thomas-robinson]

@diyorzakirov07 another "listed" typo

[thomas-robinson]

@diyorzakirov07 how should I run this? Can you updated the README for running instructions?

[diyorg07]

@thomas-robinson only parseShort.py actually runs, you should be able to just call for the main method and it would print the array with module dependencies

[thomas-robinson]

@diyorzakirov07 i tried ./parserTest.py diag_manager.F90 and it didn't work. When I did python parserTest.py diag_manager.F90 the script ran. I also tried python parserTest.py diag_manager.F90 --verbose but no additional information was printed out.

[thomas-robinson]

@diyorzakirov07 When I run mkmf, I get this printed out:

------------------------------
False
False
Done
------------------------------

This seems like some debugging prints that should be taken out.

When I run outside of the mkmf directory:

> mkmf2/mkmf2 atmos_param/
------------------------------
False
False
Traceback (most recent call last):
  File "mkmf2/mkmf2", line 61, in <module>
    writeModules(sys.argv[1], verbose, vv, recursive, mainDir)
  File "/net2/Thomas.Robinson/mkmf2/parseShort.py", line 179, in writeModules
    fileList = os.listdir(path)
OSError: [Errno 2] No such file or directory: 'atmos_param/'

When I run for FMS xanadu with a bunch of extra junk:

> mkmf2 ../FMS
------------------------------
False
False
Traceback (most recent call last):
  File "mkmf2", line 61, in <module>
    writeModules(sys.argv[1], verbose, vv, recursive, mainDir)
  File "/net2/Thomas.Robinson/mkmf2/parseShort.py", line 222, in writeModules
    MODULESINIT_str += (getFileModuleName(file) + ".$(FC_MODEXT) : " + file.split('.')[0] + ".$(OBJEXT)\n")
  File "/net2/Thomas.Robinson/mkmf2/parseShort.py", line 89, in getFileModuleName
    fileContents = open(fileName, encoding = 'latin-1').read()
TypeError: 'encoding' is an invalid keyword argument for this function

When I run with a clean FMS (xanadu), is runs to completion.

Your -v and -vv options list "Files to parse:", but the list is actually the directories. The -vv option should list each individual file, and maybe even the dependencies. The -v option could just list the file being worked on. They should both list any CPPDEFS or other options.