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update params and path builds for Nanopore

Status: Open.

#47 In trklab-metabarcoding/obitools2-taxonomy-assignment;

· tdivoll opened on Apr 1, 2026

Step_4a removing sample name appendages ("_Sx", "_trnL", etc.)

Status: Open.

#46 In trklab-metabarcoding/obitools2-taxonomy-assignment;

· mollytest24 opened on Mar 4, 2026

Step 4a - add stringr to package library

Status: Open.

#42 In trklab-metabarcoding/obitools2-taxonomy-assignment;

· mollytest24 opened on Feb 27, 2026

Step 4a - add note about sample names for user friendliness

Status: Open.

#41 In trklab-metabarcoding/obitools2-taxonomy-assignment;

· mollytest24 opened on Feb 27, 2026

Step4a - sample ordering

Status: Open.

#37 In trklab-metabarcoding/obitools2-taxonomy-assignment;

· tdivoll opened on Apr 9, 2025

Abstract todaydate param

Status: Open.

#36 In trklab-metabarcoding/obitools2-taxonomy-assignment;

· tdivoll opened on Apr 9, 2025

Add sample size summary by grouping to Step4a

Status: Open.

#34 In trklab-metabarcoding/obitools2-taxonomy-assignment;

· tdivoll opened on Apr 7, 2025

Need to think about whether we want to add a function that calculates the percentage of reads retained from Step 1c to the end of Step 3a? The total number of reads after illiminapairedend will include control samples whereas this won't, so need to think about if/how we want to do this.

Status: Open.

#22 In trklab-metabarcoding/obitools2-taxonomy-assignment;

· tdivoll opened on Nov 23, 2024