Merge pull request #12 from uclahs-cds/kpash-update-samtools-version

kpash update samtools version
uclahs-cds · Oct 17, 2023 · 5b8e799 · 5b8e799
2 parents 107e567 + a69c32f
commit 5b8e799
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -10,6 +10,9 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 ## [Unreleased]
 
 ---
+## [1.18] 2023-10-17
+### Changed
+- Update SAMTools version to 1.18
 
 ## [1.17] 2023-05-18
 ### Changed

diff --git a/Dockerfile b/Dockerfile
@@ -3,7 +3,7 @@ ARG MINIFORGE_VERSION=22.9.0-2
 FROM condaforge/mambaforge:${MINIFORGE_VERSION} AS builder
 
 # Use mamba to install tools and dependencies into /usr/local
-ARG SAMTOOLS_VERSION=1.17
+ARG SAMTOOLS_VERSION=1.18
 RUN mamba create -qy -p /usr/local \
     -c bioconda \
     -c conda-forge \

diff --git a/README.md b/README.md
@@ -9,7 +9,7 @@ SAMtools documentation [here](http://www.htslib.org/doc/samtools.html).
 # Version
 | Tool | Version |
 |------|---------|
-|SAMtools| 1.17  |
+|SAMtools| 1.18  |
 
 
 ---

diff --git a/metadata.yaml b/metadata.yaml
@@ -2,10 +2,10 @@
 category: 'docker'
 description: 'Docker repository for SAMtools'
 maintainers: ['[email protected]']
-contributors: ['Rupert Hugh-White', 'Helena Winata', 'Arpi Beshlikyan', 'Jaron Arbet', 'Sorel Fitz-Gibbon', 'Beth Neilsen']
+contributors: ['Rupert Hugh-White', 'Helena Winata', 'Arpi Beshlikyan', 'Jaron Arbet', 'Sorel Fitz-Gibbon', 'Beth Neilsen', 'Kiarod Pashminehazar']
 languages: ['Dockerfile']
 tools: ['SAMtools']
-version: ['1.17']
+version: ['1.18']
 purpose: 'A tool for reading/writing/editing/indexing/viewing SAM/BAM/CRAM format'
 references: 'Li H et al. Bioinformatics 25, (2009)'
 image_name: 'samtools'