Code

CEV Report#70

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dan-knight wants to merge 35 commits intomainuclahs-cds/package-CancerEvolutionVisualization:mainfrom feature-reportuclahs-cds/package-CancerEvolutionVisualization:feature-reportCopy head branch name to clipboard

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Commits

Commits on Feb 16, 2023

• Base CEV report Rmd

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• Basic report function

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• Update changelog

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• Update dependencies

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• Merge branch 'feature-report' into danknight-report-template

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• Merge pull request #68 from uclahs-cds/danknight-report-template

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Commits on Feb 22, 2023

• Merge branch 'main' of github.com:uclahs-cds/public-R-CancerEvolutionVisualization into feature-report

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Commits on Feb 25, 2023

• Define report inputs

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Commits on Feb 27, 2023

• Validate input column exist

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• Wrapper report data prep function

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Commits on Mar 3, 2023

• Column validation unit tests

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Commits on Mar 27, 2023

• Heatmap default colours

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• Move heatmap functions

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Commits on Mar 29, 2023

• Refactor summary heatmap

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Commits on Mar 30, 2023

• Tests and test data for heatmap functions

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• Suppress three-colour warning in create.heatmap

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• Fix linting errors

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• Update function imports

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• Update changelog

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• Update heatmap argument names

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Commits on Apr 5, 2023

• Merge branch 'danknight-refactor-heatmaps' of github.com:uclahs-cds/public-R-CancerEvolutionVisualization into feature-report

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• Validate clone IDs in report input

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• Fix DESCRIPTION

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• Column validation unit tests

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  31e820a

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• Prep report plot data

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• Tests for report plot data

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• Fix code style

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• Fix report column names

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• Add plots to CEV report Rmarkdown template

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• Update changelog

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• Fix report template filepath

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Commits on Apr 6, 2023

• Fix test data

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Commits on Apr 11, 2023

• option to save heatmaps by specifying filename

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• rename CCF.df to CCF.arr for clarity

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Commits on Dec 15, 2023

• Merge branch 'main' of github.com:uclahs-cds/package-CancerEvolutionVisualization into feature-report

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