[TBD] Requirements and Docker container
roi_segmentation: [TBD] models and supplementary files for training and running region of interest (ROI) segmentation on downsampled whole-slide images (WSIs)
qc_classificator: models and supplementary files for training and running classifier for quality control (QC) procedure
til_quantification: [TBD] scripts for patch inference, based on project
1_extract_patches.py - patch extraction scripts from WSI, based on provided tumor contours
2_prepare_patches.py - rename and copy files for next step
3_qc.py - quality control procedure to filter out nectoric and lung tissue patches
4_infer.py - [TBD] quantify cells in selected patches
5_stats.py - summarize TILs quantification results