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847 Open 1,283 Closed
847 Open 1,283 Closed
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Issues list

Drop or explicitly demand compatibility with CMake 3.5 in all dependencies
#4565 opened Apr 9, 2025 by adamnovak
1
vg surjected bam file does not open correctly in igv
#4564 opened Apr 9, 2025 by freshspaceoctopus
1
BAM flags inconsistent when running 'giraffe->BAM' compared to 'giraffe->GAM->surject->BAM'
#4563 opened Apr 8, 2025 by blinard-BIOINFO
1
warning:[GFAParser] Skipping GFA W line: GFA format error: On pass 1: On line 551210: Duplicate path ScTT#0#chr1 exists in graph
#4562 opened Apr 7, 2025 by ChenDepp
1
Hello, I wonder the nested snarl.
#4559 opened Apr 1, 2025 by pioneer-pi
1
ERROR: Signal 11 occurred. VG has crashed.
#4558 opened Apr 1, 2025 by GooLey1025
2
vg autoindex generated truncated files for workflow mpmap and rpvg
#4557 opened Mar 31, 2025 by jiaqi54
size_t vg::GSSWAligner::longest_detectable_gap(size_t, size_t) const: Assertion `read_length >= read_pos' failed.
#4556 opened Mar 27, 2025 by Summer0lhl
Add rescue work limits to short-read Giraffe
#4551 opened Mar 20, 2025 by adamnovak
Questions on Graph Construction and Genotyping Using vg
#4546 opened Mar 14, 2025 by HuangYihang1222
2
Release vg v1.65.0
#4539 opened Mar 11, 2025 by adamnovak
27 tasks
v1.65.0
report error when use vg surject convert gam to bam then use gatk detect variants
#4538 opened Mar 8, 2025 by ChenDepp
8
How can I add an extra sequence to graph?
#4535 opened Mar 3, 2025 by yeeus
1
Unable to set only one haplotype of a diploid to reference-sense in gbwt
#4533 opened Feb 28, 2025 by ASLeonard
2
The size for vg pack and call file of all samples were the same , and all variations were lowad
#4532 opened Feb 27, 2025 by wuxiaopei0509
3
Harden vg file readers and memory-mapping systems against maliciously-crafted files
#4530 opened Feb 26, 2025 by adamnovak
2
Diagnose and fix new wrong MAPQ 60 HiFi reads
#4525 opened Feb 13, 2025 by adamnovak
Tag "transcript_id" not found in attributes when in index with vg
#4515 opened Jan 31, 2025 by ld9866
1
Extract a single chromosome or a region of the chromosome from GBZ
#4511 opened Jan 28, 2025 by jikhashkya
2
Converting multiple sequence alignments to variation graphs
#4510 opened Jan 28, 2025 by danimelsz
1
vg call output: some negative qualities and overlapping structural variants
#4500 opened Jan 20, 2025 by MarionPerrier
2
ERROR: Signal 6 occurred. VG has crashed.
#4482 opened Dec 19, 2024 by shin0727
1
Unable to clone vg recursively
#4480 opened Dec 17, 2024 by tsnorri
5
How to classify SV from a graph constructed directly from aligned de novo assemblies
#4476 opened Dec 10, 2024 by dudududu12138
1
vg call issues
#4475 opened Dec 10, 2024 by asylvz
7
ProTip! Exclude everything labeled bug with -label:bug.