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[Kernel] Harden top_k_per_row against NaN and under-filled output - #50201

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[Kernel] Harden top_k_per_row against NaN and under-filled output#50201
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Smallfu666:fix/49896-topk-nan-hardening

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Purpose

Addresses the kernel-hardening portion of #49896: prevent top_k_per_row_prefill (and the shared topKPerRowJob used by the decode/split variants) from emitting uninitialized or invalid indices when NaN values leave fewer than top_k selectable candidates.

Root cause in csrc/libtorch_stable/sampler.cu: extractBinIdx bins positive-NaN bit patterns above +inf, so NaN-dominated rows place the histogram threshold bin on a NaN bin; the insertion-sort final pass's NaN comparisons all evaluate false, so every threshold-bin element writes slot 0 and the remaining smemOutput slots keep uninitialized dynamic shared memory, which the unconditional final store loop emits as indices. With fewer than top_k non-NaN candidates, smemThresholdBinIdx is additionally read unset. Downstream gathers with the garbage indices then hit device-side asserts / illegal memory access.

Changes (kernel +42/−1, tests +209):

  • isNaNLogit() bit-pattern test (robust under --use_fast_math, HIP-compatible via __float_as_uint);
  • NaN exclusion in both distributeToBins and processBins, kept consistent so histogram counts match prefix sums;
  • well-defined fallback when fewer than top_k candidates exist (smemThresholdBinIdx = kNumBins, smemFinalBinSize = 0);
  • smemOutput pre-filled with -1 (multi-block variant also -FLT_MAX logit halves), finalIndices[ii] = -1 init in the radix path, and a -1-preserving rebase in the strided final store — under-filled rows now return -1 padding like the short-row path instead of garbage.

Scope notes:

Test Plan

Hardware: H200 / SM90 (driver 580.65.06), CUDA 13.0 (nvcc 13.0.48), torch 2.13.0+cu130, kernel built from source (_C_stable_libtorch) for both parent and patched in the same job/toolchain, on top of current main (7f4c52f2). The defect is data-driven (NaN input), per the issue not SM120-specific — confirmed: the unmodified kernel fails identically on H200.

  • Canary: the issue's reproduction (clean vs 83%-NaN logits; output prefilled with -7, checking garbage / unwritten / out-of-range / NaN-selected rows).
  • New tests in tests/kernels/test_top_k_per_row.py: 16 NaN cases covering prefill insertion-sort and radix-sort variants (4869-row and 12544-row shapes) and decode insertion / radix / split+merge (8192 / 16384 / 250000), NaN fractions 0.5 / 0.83 / 1.0, asserting: all indices in [-1, rowLen), no unwritten sentinel survives, exactly min(top_k, num_finite) valid indices with -1 suffix padding, and selected values equal to a NaN-excluded torch.topk reference.
  • Regression: full existing test_top_k_per_row.py.
  • compute-sanitizer memcheck on the canary + prefill NaN + decode NaN cases, and initcheck on the canary (patched build).

Test Result

Input Parent (unpatched) Patched
clean finite 166 passed / 6 skipped (reference set-equality) 166 passed / 6 skipped — unchanged
partial NaN, finite ≥ k NaN tests FAILED (wrong/garbage sets) 16 passed — finite-only top-k equals reference
partial NaN, finite < k canary: device-side assert (AcceleratorError); NaN tests FAILED canary PASS (garbage_rows=0 unwritten_rows=0 nan_selected_hist_rows=0 out_of_range_rows=0); tests assert finite indices + -1 padding
all NaN NaN tests FAILED (garbage/NaN-bit indices) 16 passed — all -1 on histogram rows
  • New NaN tests: parent 16 failed → patched 16 passed (identical test code, same job).
  • compute-sanitizer: memcheck ×3 and initcheck ×1 all ERROR SUMMARY: 0 errors.
  • Reverse A/B on the pre-rebase tree: unpatched .so swapped back → 16 failed; patched restored → canary PASS.

…nder-filled output

The histogram path of topKPerRowJob (top_k_per_row_prefill /
top_k_per_row_decode) mishandles NaN logits (issue vllm-project#49896):

- extractBinIdx bins positive-NaN bit patterns above +inf, so
  NaN-dominated rows put the threshold bin on a NaN bin.
- The insertion-sort final pass compares NaN logits (all comparisons
  false), so every threshold-bin element computes outIndex 0: one slot
  is written repeatedly and the remaining smemOutput slots keep
  uninitialized shared memory, which the unconditional final store loop
  then emits as indices (observed: 2143289344 = 0x7FC00000, a float32
  NaN bit pattern reinterpreted as an int32 index). Downstream
  consumers gather block_table with these indices -> illegal memory
  access (DeepSeek-V4 long prefill on SM12x).

Fix (data-driven, arch-independent):
- Exclude NaN logits from selection in both histogram phases, via a
  bit-pattern test that is robust under --use_fast_math.
- Pre-fill smemOutput with -1 (and -FLT_MAX for the logits half in the
  multiple-blocks-per-row variant) so under-filled rows produce the
  documented -1 padding of the short-row path instead of leaking
  uninitialized shared memory.
- Default the per-step threshold state to "emit every matching
  element" so rows with fewer than topK non-NaN candidates terminate
  cleanly instead of reading an unset threshold bin.
- Initialize the radix-sort padding indices to -1 so padding lanes
  can never write garbage into smemOutput.
- Preserve -1 padding in the strided final store (do not rebase the
  sentinel by rowStart).

Adds NaN-input regression tests covering the prefill insertion-sort and
radix-sort variants and all three decode paths (insertion, radix,
split+merge).

Validated on NVIDIA H200 (SM90): the 25-line canary from vllm-project#49896 fails
before the fix (garbage indices -> device-side gather asserts) and
passes after; the existing test_top_k_per_row.py suite passes
unchanged. Per the issue, the defect is data-driven (NaN input) rather
than SM120-specific.

Signed-off-by: Han-Yin Chang <nick20350@gmail.com>

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@yashb98

yashb98 commented Jul 29, 2026

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I have a GB10 (DGX Spark, sm_121) and the thread only has sm_90 and sm_120 so far, so I built both sides of this and ran the canary from #49896.

Built sampler.cu standalone against base 7f4c52f2 and against your head, same toolchain both times: nvcc 13.0, gcc 13.3, torch 2.11.0+cu130, driver 580.142, aarch64. Canary shape as posted, rows=4869, cols=1243, top_k=512.

Short version: the fix works here.

input parent patched
clean 0 bad rows 0, unchanged
50% NaN 726 / 4869 0
83% NaN 2263 / 4869 0
100% NaN 2383 / 4869 0

Five runs at 83%, clean every time, and nothing outside [-1, rowLen) in any patched run.

Worth flagging about this platform: the published 0.26.0 aarch64 wheel has no sm_121 cubin and no PTX, so a GB10 is actually running the sm_120 binary. I ran the A/B under the default codegen and again forcing TORCH_CUDA_ARCH_LIST=12.1a, and got the same answer both ways, so it holds for what users have today and for a native build.

One thing I think is worth a second look, and I might be wrong about it. The canary's "unwritten" count doesn't seem to be measuring unwritten slots. Every output slot always gets written: the store loop at the end of the histogram path is unconditional over topK (sampler.cu:527-541), and short rows pad out to topK with -1 (:388-400). So the prefill sentinel shouldn't be able to survive anywhere.

I checked by keeping the input byte-identical and only changing the sentinel. -7 left 0 rows, -8 left 81. Those differ by one bit and neither can be a real index, so if the slots were genuinely untouched both should have come back the same. -1234567 gave 75, 0x55555555 gave 82. It looks like garbage that happens to collide with whatever value you picked, at around 1 to 2% of the 2.49M slots, which is far more often than a random 32-bit value would, so the leftover shared memory is probably fairly structured. Sentinel 0 hits nearly every row, but that one is also a legal index.

If that's right, the ~500 unwritten rows on sm_120 and the 0 to 95 I see here aren't an architecture difference, just different collision rates. The signals that held everywhere I looked were out-of-range indices and the 0x7FC00000 pattern, and both go to zero with your patch. Doesn't change the fix at all, if anything it makes the case a bit stronger, since the slots aren't empty, they have garbage in them.

Last thing, for the affected range: this also reproduces on the released 0.24.0 wheel, not just 0.25.1 and 0.26.0. Only fbc9ba6d has touched sampler.cu since v0.24.0 and it just adds a DeviceGuard in the host launcher, so it's the same kernel.

Happy to run your new tests/kernels/test_top_k_per_row.py cases on sm_121, or any other shape that would help.

@Smallfu666

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Thanks @yashb98 — sm_121 coverage is exactly what this thread was missing, and the note that the published aarch64 wheel runs the sm_120 binary on GB10 is useful on its own.

On the sentinel observation: agreed. The final store loop is unconditional over topK and short rows pad with -1, so on any run that completes, a surviving prefill value can only be leftover shared-memory garbage colliding with the sentinel — your bit-identical A/B across sentinel values shows that convincingly. It matches the mechanism in the PR description (slot 0 written repeatedly, remaining smemOutput left as uninitialized shared memory and emitted by that unconditional store): the slots aren't empty, they hold garbage. So "unwritten" in the canary is a misnomer for a collision count; I'll rename it in the test comments in the next revision.

One caveat: when the parent kernel aborts mid-run (the device-side assert we hit on H200 in the finite < top_k case), rows past the failure point may genuinely never reach the store — a separate condition from what you measured on completed runs. For the initialization side, compute-sanitizer initcheck on the patched build reported 0 errors; we did not run initcheck on the parent, so your sentinel A/B is the best direct evidence for the garbage interpretation there.

On the affected range: we only tested back to 0.25.1, so I won't claim earlier from our side, but your 0.24.0 repro is consistent with the history — only fbc9ba6d has touched sampler.cu since the stable-ABI migration, and it is host-launcher-only. Worth recording on #49896.

And yes, sm_121 runs of tests/kernels/test_top_k_per_row.py would be very welcome. Highest value: (a) prefill insertion-sort at nan_fraction=0.83, top_k=512 (the finite < top_k boundary), (b) the 12544-row radix-sort prefill variant, and (c) decode split+merge at 250000 rows — together they cover the three modified code paths, and split+merge has only been exercised on sm_90 so far.

@yashb98

yashb98 commented Jul 31, 2026

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Thanks, and agreed on the mid-run-abort point. My runs all completed, so what I measured is sentinel collisions on completed runs. Rows past a device-side assert are a different case, and I'll keep the two apart in any future wording. And since ck was only run on the patched build, the sentinel A/B stays the parent-side evidence. I won't generalize it past runs.
I'll add the affected-range note on #49896: the 0.24.0 repro plus the fbc9ba6d history (host-launcher-only since the stable-ABI migration). I'll frame it as consistent with your 0.25.1 testing, not as independent coverage further back, since I haven't tested the versions in between

On the sm_121 runs: yes, I'll take all three against your head.

  • (a) prefill insertion-sort at nan_fraction=0.83, top_k=512
  • (b) the 12544-row radix-sort prefill variant
  • (c) decode split+merge at 250000 rows

Same toolchain as before (nvcc 13.0, gcc 13.3, torch 2.11.0+cu130, driver 580.142, aarch64). I'll post pass/fail and anything sm_121-specific that shows up. It's my only GPU and it has a queue, so give me a few days, but these go first.

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