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58 Open 116 Closed
58 Open 116 Closed
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Issues list

Could not find an available minimap2 executable.
#246 opened Mar 31, 2025 by Sung-hub
rel_abund and rpkm values change when unbinned contigs are considered during binning
#244 opened Mar 27, 2025 by jrhim
1
the argument '--bam-files <bam-files>...' cannot be used with '--bam-file-cache-directory <bam-file-cache-directory>
#243 opened Mar 26, 2025 by Sung-hub
1
add support for fasta.gz file for reference
#242 opened Mar 21, 2025 by jianshu93
Inquiry
#241 opened Mar 6, 2025 by LanSabb
--contig-end-exclusion feature request
#238 opened Feb 15, 2025 by jianshu93
5
Build fails on arm64
#234 opened Dec 16, 2024 by yurivict
"stream did not contain valid UTF-8"
#232 opened Dec 12, 2024 by pdenuyl2
Calculating RPKM of metaT reads against a collection of MAGs
#230 opened Nov 26, 2024 by EMagadur
5
Add coverM to homebrew-bio
#228 opened Oct 12, 2024 by jianshu93
"relative_abundance" option was not provided in "contig" mode
#211 opened May 3, 2024 by microjishuai
1
Estimating the abundances of multiple viral genomes
#210 opened Apr 6, 2024 by asierFernandezP
5
Error when using sharded flag
#205 opened Mar 6, 2024 by AvriXue
Filter based on minimum horizontal coverage
#195 opened Jan 12, 2024 by ntromas
2
[Enhancement] Improving Multi-sample Parallelisation Strategy
#193 opened Dec 23, 2023 by erfanshekarriz
2
[Documentation] Example tutorial walkthroughs and test data
#192 opened Dec 22, 2023 by erfanshekarriz
How change the path of tmp files
#190 opened Dec 12, 2023 by microbial-cookie
1
What is the meaning about "--min-read-percent-identity "
#189 opened Nov 17, 2023 by weiguanyue
1
coverm contig Intermediate file
#187 opened Nov 3, 2023 by PonderLi
defining an output file
#184 opened Aug 30, 2023 by Sabrin2020
7
tpm and --exclude-supplementary
#183 opened Aug 27, 2023 by PonderLi
paper cut: define clsuter methods possibilities properly
#180 opened Aug 5, 2023 by wwood
Usage of --sharded
#172 opened Jun 18, 2023 by Rridley7
1
[2023-06-04T07:45:16Z INFO coverm::contig] In sample 'cdhit_rep_seq.fna/SRR13083091_1.fq.gz', found 0 reads mapped out of 0 total (NaN%)
#169 opened Jun 4, 2023 by JiaLonghao1997
3
CoverM to assess genomes relative proportion in Metatranscriptomics data?
#167 opened Jun 2, 2023 by JSSaini
1
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