updated to 4.0.0

yeastgenome · May 22, 2019 · 313c50e · 313c50e
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commit 313c50e
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diff --git a/.gradle/4.1/fileContent/annotation-processors.bin b/.gradle/4.1/fileContent/annotation-processors.bin
diff --git a/.gradle/4.1/fileContent/fileContent.lock b/.gradle/4.1/fileContent/fileContent.lock
diff --git a/.gradle/4.1/fileHashes/fileHashes.bin b/.gradle/4.1/fileHashes/fileHashes.bin
diff --git a/.gradle/4.1/fileHashes/fileHashes.lock b/.gradle/4.1/fileHashes/fileHashes.lock
diff --git a/.gradle/4.1/fileHashes/resourceHashesCache.bin b/.gradle/4.1/fileHashes/resourceHashesCache.bin
diff --git a/.gradle/4.1/taskHistory/fileSnapshots.bin b/.gradle/4.1/taskHistory/fileSnapshots.bin
diff --git a/.gradle/4.1/taskHistory/taskHistory.bin b/.gradle/4.1/taskHistory/taskHistory.bin
diff --git a/.gradle/4.1/taskHistory/taskHistory.lock b/.gradle/4.1/taskHistory/taskHistory.lock
diff --git a/.idea/gradle.xml b/.idea/gradle.xml
diff --git a/.idea/workspace.xml b/.idea/workspace.xml
diff --git a/build.gradle b/build.gradle
@@ -21,7 +21,7 @@ ext {
 
 subprojects {
     group = 'org.intermine'
-    version = '3.1.1'
+    version = '4.0.0'
 
     apply plugin: 'java'
     apply plugin: 'maven'

diff --git a/...build/classes/java/main/org/intermine/bio/dataconversion/CglabrataHomologsConverter.class b/...build/classes/java/main/org/intermine/bio/dataconversion/CglabrataHomologsConverter.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ARS.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ARS.class
diff --git a/...brata-homologs/build/classes/java/main/org/intermine/model/bio/ARSConsensusSequence.class b/...brata-homologs/build/classes/java/main/org/intermine/model/bio/ARSConsensusSequence.class
diff --git a/...homologs/build/classes/java/main/org/intermine/model/bio/ARSConsensusSequenceShadow.class b/...homologs/build/classes/java/main/org/intermine/model/bio/ARSConsensusSequenceShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ARSShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ARSShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Annotatable.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Annotatable.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/AnnotatableShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/AnnotatableShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Author.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Author.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/AuthorShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/AuthorShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/BindingSite.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/BindingSite.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/BindingSiteShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/BindingSiteShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/BioEntity.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/BioEntity.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/BioEntityShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/BioEntityShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/BiologicalRegion.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/BiologicalRegion.class
diff --git a/...ata-homologs/build/classes/java/main/org/intermine/model/bio/BiologicalRegionShadow.class b/...ata-homologs/build/classes/java/main/org/intermine/model/bio/BiologicalRegionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/BlockedReadingFrame.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/BlockedReadingFrame.class
diff --git a/...-homologs/build/classes/java/main/org/intermine/model/bio/BlockedReadingFrameShadow.class b/...-homologs/build/classes/java/main/org/intermine/model/bio/BlockedReadingFrameShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/CDS.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/CDS.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/CDSShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/CDSShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/CausalRelationship.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/CausalRelationship.class
diff --git a/...a-homologs/build/classes/java/main/org/intermine/model/bio/CausalRelationshipShadow.class b/...a-homologs/build/classes/java/main/org/intermine/model/bio/CausalRelationshipShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Centromere.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Centromere.class
diff --git a/...rata-homologs/build/classes/java/main/org/intermine/model/bio/CentromereDNAElementI.class b/...rata-homologs/build/classes/java/main/org/intermine/model/bio/CentromereDNAElementI.class
diff --git a/...ata-homologs/build/classes/java/main/org/intermine/model/bio/CentromereDNAElementII.class b/...ata-homologs/build/classes/java/main/org/intermine/model/bio/CentromereDNAElementII.class
diff --git a/...ta-homologs/build/classes/java/main/org/intermine/model/bio/CentromereDNAElementIII.class b/...ta-homologs/build/classes/java/main/org/intermine/model/bio/CentromereDNAElementIII.class
diff --git a/...ologs/build/classes/java/main/org/intermine/model/bio/CentromereDNAElementIIIShadow.class b/...ologs/build/classes/java/main/org/intermine/model/bio/CentromereDNAElementIIIShadow.class
diff --git a/...mologs/build/classes/java/main/org/intermine/model/bio/CentromereDNAElementIIShadow.class b/...mologs/build/classes/java/main/org/intermine/model/bio/CentromereDNAElementIIShadow.class
diff --git a/...omologs/build/classes/java/main/org/intermine/model/bio/CentromereDNAElementIShadow.class b/...omologs/build/classes/java/main/org/intermine/model/bio/CentromereDNAElementIShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/CentromereShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/CentromereShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Chromosome.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Chromosome.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ChromosomeShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ChromosomeShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Comment.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Comment.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/CommentShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/CommentShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Complement.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Complement.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ComplementShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ComplementShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Complex.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Complex.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ComplexShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ComplexShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/CrossReference.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/CrossReference.class
diff --git a/...brata-homologs/build/classes/java/main/org/intermine/model/bio/CrossReferenceShadow.class b/...brata-homologs/build/classes/java/main/org/intermine/model/bio/CrossReferenceShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/DataSet.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/DataSet.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/DataSetShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/DataSetShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/DataSource.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/DataSource.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/DataSourceShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/DataSourceShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/DatabaseReference.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/DatabaseReference.class
diff --git a/...ta-homologs/build/classes/java/main/org/intermine/model/bio/DatabaseReferenceShadow.class b/...ta-homologs/build/classes/java/main/org/intermine/model/bio/DatabaseReferenceShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Disease.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Disease.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/DiseaseShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/DiseaseShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ECOTerm.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ECOTerm.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ECOTermShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ECOTermShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Exon.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Exon.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ExonShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ExonShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ExpressionCondition.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ExpressionCondition.class
diff --git a/...-homologs/build/classes/java/main/org/intermine/model/bio/ExpressionConditionShadow.class b/...-homologs/build/classes/java/main/org/intermine/model/bio/ExpressionConditionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ExpressionDataSet.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ExpressionDataSet.class
diff --git a/...ta-homologs/build/classes/java/main/org/intermine/model/bio/ExpressionDataSetShadow.class b/...ta-homologs/build/classes/java/main/org/intermine/model/bio/ExpressionDataSetShadow.class
diff --git a/...brata-homologs/build/classes/java/main/org/intermine/model/bio/ExpressionDataSetTag.class b/...brata-homologs/build/classes/java/main/org/intermine/model/bio/ExpressionDataSetTag.class
diff --git a/...homologs/build/classes/java/main/org/intermine/model/bio/ExpressionDataSetTagShadow.class b/...homologs/build/classes/java/main/org/intermine/model/bio/ExpressionDataSetTagShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ExpressionScore.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ExpressionScore.class
diff --git a/...rata-homologs/build/classes/java/main/org/intermine/model/bio/ExpressionScoreShadow.class b/...rata-homologs/build/classes/java/main/org/intermine/model/bio/ExpressionScoreShadow.class
diff --git a/...ogs/build/classes/java/main/org/intermine/model/bio/ExternalTranscribedSpacerRegion.class b/...ogs/build/classes/java/main/org/intermine/model/bio/ExternalTranscribedSpacerRegion.class
diff --git a/...ild/classes/java/main/org/intermine/model/bio/ExternalTranscribedSpacerRegionShadow.class b/...ild/classes/java/main/org/intermine/model/bio/ExternalTranscribedSpacerRegionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/FivePrimeUTR.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/FivePrimeUTR.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/FivePrimeUTRIntron.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/FivePrimeUTRIntron.class
diff --git a/...a-homologs/build/classes/java/main/org/intermine/model/bio/FivePrimeUTRIntronShadow.class b/...a-homologs/build/classes/java/main/org/intermine/model/bio/FivePrimeUTRIntronShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/FivePrimeUTRShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/FivePrimeUTRShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOAnnotation.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOAnnotation.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOAnnotationShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOAnnotationShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOEvidence.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOEvidence.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOEvidenceCode.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOEvidenceCode.class
diff --git a/...brata-homologs/build/classes/java/main/org/intermine/model/bio/GOEvidenceCodeShadow.class b/...brata-homologs/build/classes/java/main/org/intermine/model/bio/GOEvidenceCodeShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOEvidenceShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOEvidenceShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOSlimTerm.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOSlimTerm.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOSlimTermShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOSlimTermShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOTerm.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOTerm.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOTermShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GOTermShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Gene.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Gene.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GeneFlankingRegion.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GeneFlankingRegion.class
diff --git a/...a-homologs/build/classes/java/main/org/intermine/model/bio/GeneFlankingRegionShadow.class b/...a-homologs/build/classes/java/main/org/intermine/model/bio/GeneFlankingRegionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GeneGroup.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GeneGroup.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GeneGroupShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GeneGroupShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GeneShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/GeneShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Homologue.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Homologue.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/HomologueShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/HomologueShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Insertion.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Insertion.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/InsertionShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/InsertionShadow.class
diff --git a/...brata-homologs/build/classes/java/main/org/intermine/model/bio/InteinEncodingRegion.class b/...brata-homologs/build/classes/java/main/org/intermine/model/bio/InteinEncodingRegion.class
diff --git a/...homologs/build/classes/java/main/org/intermine/model/bio/InteinEncodingRegionShadow.class b/...homologs/build/classes/java/main/org/intermine/model/bio/InteinEncodingRegionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Interaction.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Interaction.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/InteractionDetail.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/InteractionDetail.class
diff --git a/...ta-homologs/build/classes/java/main/org/intermine/model/bio/InteractionDetailShadow.class b/...ta-homologs/build/classes/java/main/org/intermine/model/bio/InteractionDetailShadow.class
diff --git a/...rata-homologs/build/classes/java/main/org/intermine/model/bio/InteractionExperiment.class b/...rata-homologs/build/classes/java/main/org/intermine/model/bio/InteractionExperiment.class
diff --git a/...omologs/build/classes/java/main/org/intermine/model/bio/InteractionExperimentShadow.class b/...omologs/build/classes/java/main/org/intermine/model/bio/InteractionExperimentShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/InteractionRegion.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/InteractionRegion.class
diff --git a/...ta-homologs/build/classes/java/main/org/intermine/model/bio/InteractionRegionShadow.class b/...ta-homologs/build/classes/java/main/org/intermine/model/bio/InteractionRegionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/InteractionShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/InteractionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/InteractionTerm.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/InteractionTerm.class
diff --git a/...rata-homologs/build/classes/java/main/org/intermine/model/bio/InteractionTermShadow.class b/...rata-homologs/build/classes/java/main/org/intermine/model/bio/InteractionTermShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Interactor.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Interactor.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/InteractorShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/InteractorShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/IntergenicRegion.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/IntergenicRegion.class
diff --git a/...ata-homologs/build/classes/java/main/org/intermine/model/bio/IntergenicRegionShadow.class b/...ata-homologs/build/classes/java/main/org/intermine/model/bio/IntergenicRegionShadow.class
diff --git a/...ogs/build/classes/java/main/org/intermine/model/bio/InternalTranscribedSpacerRegion.class b/...ogs/build/classes/java/main/org/intermine/model/bio/InternalTranscribedSpacerRegion.class
diff --git a/...ild/classes/java/main/org/intermine/model/bio/InternalTranscribedSpacerRegionShadow.class b/...ild/classes/java/main/org/intermine/model/bio/InternalTranscribedSpacerRegionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Intron.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Intron.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/IntronShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/IntronShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/LiteratureTopic.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/LiteratureTopic.class
diff --git a/...rata-homologs/build/classes/java/main/org/intermine/model/bio/LiteratureTopicShadow.class b/...rata-homologs/build/classes/java/main/org/intermine/model/bio/LiteratureTopicShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Location.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Location.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/LocationShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/LocationShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/LongTerminalRepeat.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/LongTerminalRepeat.class
diff --git a/...a-homologs/build/classes/java/main/org/intermine/model/bio/LongTerminalRepeatShadow.class b/...a-homologs/build/classes/java/main/org/intermine/model/bio/LongTerminalRepeatShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/MRNA.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/MRNA.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/MRNAShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/MRNAShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/MatingTypeRegion.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/MatingTypeRegion.class
diff --git a/...ata-homologs/build/classes/java/main/org/intermine/model/bio/MatingTypeRegionShadow.class b/...ata-homologs/build/classes/java/main/org/intermine/model/bio/MatingTypeRegionShadow.class
diff --git a/...brata-homologs/build/classes/java/main/org/intermine/model/bio/MatrixAttachmentSite.class b/...brata-homologs/build/classes/java/main/org/intermine/model/bio/MatrixAttachmentSite.class
diff --git a/...homologs/build/classes/java/main/org/intermine/model/bio/MatrixAttachmentSiteShadow.class b/...homologs/build/classes/java/main/org/intermine/model/bio/MatrixAttachmentSiteShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/MeshTerm.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/MeshTerm.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/MeshTermShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/MeshTermShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/NcRNAGene.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/NcRNAGene.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/NcRNAGeneShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/NcRNAGeneShadow.class
diff --git a/...brata-homologs/build/classes/java/main/org/intermine/model/bio/NonTranscribedRegion.class b/...brata-homologs/build/classes/java/main/org/intermine/model/bio/NonTranscribedRegion.class
diff --git a/...homologs/build/classes/java/main/org/intermine/model/bio/NonTranscribedRegionShadow.class b/...homologs/build/classes/java/main/org/intermine/model/bio/NonTranscribedRegionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/NoncodingExon.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/NoncodingExon.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/NoncodingExonShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/NoncodingExonShadow.class
diff --git a/...logs/build/classes/java/main/org/intermine/model/bio/NotInSystematicSequenceOfS288C.class b/...logs/build/classes/java/main/org/intermine/model/bio/NotInSystematicSequenceOfS288C.class
diff --git a/...uild/classes/java/main/org/intermine/model/bio/NotInSystematicSequenceOfS288CShadow.class b/...uild/classes/java/main/org/intermine/model/bio/NotInSystematicSequenceOfS288CShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ORF.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ORF.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ORFShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ORFShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Ontology.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Ontology.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyAnnotation.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyAnnotation.class
diff --git a/...logs/build/classes/java/main/org/intermine/model/bio/OntologyAnnotationEvidenceCode.class b/...logs/build/classes/java/main/org/intermine/model/bio/OntologyAnnotationEvidenceCode.class
diff --git a/...uild/classes/java/main/org/intermine/model/bio/OntologyAnnotationEvidenceCodeShadow.class b/...uild/classes/java/main/org/intermine/model/bio/OntologyAnnotationEvidenceCodeShadow.class
diff --git a/...a-homologs/build/classes/java/main/org/intermine/model/bio/OntologyAnnotationShadow.class b/...a-homologs/build/classes/java/main/org/intermine/model/bio/OntologyAnnotationShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyEvidence.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyEvidence.class
diff --git a/...ata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyEvidenceShadow.class b/...ata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyEvidenceShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyRelation.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyRelation.class
diff --git a/...ata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyRelationShadow.class b/...ata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyRelationShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyTerm.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyTerm.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyTermShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyTermShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyTermSynonym.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OntologyTermSynonym.class
diff --git a/...-homologs/build/classes/java/main/org/intermine/model/bio/OntologyTermSynonymShadow.class b/...-homologs/build/classes/java/main/org/intermine/model/bio/OntologyTermSynonymShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Organism.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Organism.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OrganismShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OrganismShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OriginOfReplication.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OriginOfReplication.class
diff --git a/...-homologs/build/classes/java/main/org/intermine/model/bio/OriginOfReplicationShadow.class b/...-homologs/build/classes/java/main/org/intermine/model/bio/OriginOfReplicationShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OrthologueEvidence.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/OrthologueEvidence.class
diff --git a/...ata-homologs/build/classes/java/main/org/intermine/model/bio/OrthologueEvidenceCode.class b/...ata-homologs/build/classes/java/main/org/intermine/model/bio/OrthologueEvidenceCode.class
diff --git a/...mologs/build/classes/java/main/org/intermine/model/bio/OrthologueEvidenceCodeShadow.class b/...mologs/build/classes/java/main/org/intermine/model/bio/OrthologueEvidenceCodeShadow.class
diff --git a/...a-homologs/build/classes/java/main/org/intermine/model/bio/OrthologueEvidenceShadow.class b/...a-homologs/build/classes/java/main/org/intermine/model/bio/OrthologueEvidenceShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Pathway.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Pathway.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/PathwayShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/PathwayShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Phenotype.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Phenotype.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/PhenotypeShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/PhenotypeShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Plasmid.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Plasmid.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/PlasmidShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/PlasmidShadow.class
diff --git a/...mologs/build/classes/java/main/org/intermine/model/bio/Plus1TranslationalFrameshift.class b/...mologs/build/classes/java/main/org/intermine/model/bio/Plus1TranslationalFrameshift.class
diff --git a/.../build/classes/java/main/org/intermine/model/bio/Plus1TranslationalFrameshiftShadow.class b/.../build/classes/java/main/org/intermine/model/bio/Plus1TranslationalFrameshiftShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Protein.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Protein.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinAbundance.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinAbundance.class
diff --git a/...ata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinAbundanceShadow.class b/...ata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinAbundanceShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinCodingGene.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinCodingGene.class
diff --git a/...ta-homologs/build/classes/java/main/org/intermine/model/bio/ProteinCodingGeneShadow.class b/...ta-homologs/build/classes/java/main/org/intermine/model/bio/ProteinCodingGeneShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinDomain.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinDomain.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinDomainShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinDomainShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinHalfLife.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinHalfLife.class
diff --git a/...rata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinHalfLifeShadow.class b/...rata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinHalfLifeShadow.class
diff --git a/...ta-homologs/build/classes/java/main/org/intermine/model/bio/ProteinModificationSite.class b/...ta-homologs/build/classes/java/main/org/intermine/model/bio/ProteinModificationSite.class
diff --git a/...ologs/build/classes/java/main/org/intermine/model/bio/ProteinModificationSiteShadow.class b/...ologs/build/classes/java/main/org/intermine/model/bio/ProteinModificationSiteShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinProperty.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinProperty.class
diff --git a/...rata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinPropertyShadow.class b/...rata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinPropertyShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ProteinShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Pseudogene.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Pseudogene.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/PseudogeneShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/PseudogeneShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Publication.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Publication.class
diff --git a/...rata-homologs/build/classes/java/main/org/intermine/model/bio/PublicationAnnotation.class b/...rata-homologs/build/classes/java/main/org/intermine/model/bio/PublicationAnnotation.class
diff --git a/...omologs/build/classes/java/main/org/intermine/model/bio/PublicationAnnotationShadow.class b/...omologs/build/classes/java/main/org/intermine/model/bio/PublicationAnnotationShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/PublicationShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/PublicationShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RNA.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RNA.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RNAShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RNAShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RRNAGene.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RRNAGene.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RRNAGeneShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RRNAGeneShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RegulationEvidence.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RegulationEvidence.class
diff --git a/...a-homologs/build/classes/java/main/org/intermine/model/bio/RegulationEvidenceShadow.class b/...a-homologs/build/classes/java/main/org/intermine/model/bio/RegulationEvidenceShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RegulationSummary.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RegulationSummary.class
diff --git a/...ta-homologs/build/classes/java/main/org/intermine/model/bio/RegulationSummaryShadow.class b/...ta-homologs/build/classes/java/main/org/intermine/model/bio/RegulationSummaryShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RegulatoryRegion.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RegulatoryRegion.class
diff --git a/...ata-homologs/build/classes/java/main/org/intermine/model/bio/RegulatoryRegionShadow.class b/...ata-homologs/build/classes/java/main/org/intermine/model/bio/RegulatoryRegionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RepeatRegion.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RepeatRegion.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RepeatRegionShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/RepeatRegionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Retrotransposon.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Retrotransposon.class
diff --git a/...rata-homologs/build/classes/java/main/org/intermine/model/bio/RetrotransposonShadow.class b/...rata-homologs/build/classes/java/main/org/intermine/model/bio/RetrotransposonShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SAGETag.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SAGETag.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SAGETagShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SAGETagShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SOTerm.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SOTerm.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SOTermShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SOTermShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Sequence.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Sequence.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SequenceCollection.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SequenceCollection.class
diff --git a/...a-homologs/build/classes/java/main/org/intermine/model/bio/SequenceCollectionShadow.class b/...a-homologs/build/classes/java/main/org/intermine/model/bio/SequenceCollectionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SequenceFeature.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SequenceFeature.class
diff --git a/...rata-homologs/build/classes/java/main/org/intermine/model/bio/SequenceFeatureShadow.class b/...rata-homologs/build/classes/java/main/org/intermine/model/bio/SequenceFeatureShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SequenceShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SequenceShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SequenceVariant.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SequenceVariant.class
diff --git a/...rata-homologs/build/classes/java/main/org/intermine/model/bio/SequenceVariantShadow.class b/...rata-homologs/build/classes/java/main/org/intermine/model/bio/SequenceVariantShadow.class
diff --git a/...ologs/build/classes/java/main/org/intermine/model/bio/SilentMatingTypeCassetteArray.class b/...ologs/build/classes/java/main/org/intermine/model/bio/SilentMatingTypeCassetteArray.class
diff --git a/...build/classes/java/main/org/intermine/model/bio/SilentMatingTypeCassetteArrayShadow.class b/...build/classes/java/main/org/intermine/model/bio/SilentMatingTypeCassetteArrayShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SmallMolecule.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SmallMolecule.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SmallMoleculeShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SmallMoleculeShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SnRNAGene.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SnRNAGene.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SnRNAGeneShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SnRNAGeneShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SnoRNAGene.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SnoRNAGene.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SnoRNAGeneShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SnoRNAGeneShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Strain.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Strain.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/StrainShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/StrainShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Synonym.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Synonym.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SynonymShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SynonymShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SyntenicRegion.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SyntenicRegion.class
diff --git a/...brata-homologs/build/classes/java/main/org/intermine/model/bio/SyntenicRegionShadow.class b/...brata-homologs/build/classes/java/main/org/intermine/model/bio/SyntenicRegionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SyntenyBlock.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SyntenyBlock.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SyntenyBlockShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/SyntenyBlockShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TFBindingSite.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TFBindingSite.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TFBindingSiteShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TFBindingSiteShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TRNAGene.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TRNAGene.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TRNAGeneShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TRNAGeneShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TelomeraseRNAGene.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TelomeraseRNAGene.class
diff --git a/...ta-homologs/build/classes/java/main/org/intermine/model/bio/TelomeraseRNAGeneShadow.class b/...ta-homologs/build/classes/java/main/org/intermine/model/bio/TelomeraseRNAGeneShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Telomere.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Telomere.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TelomereShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TelomereShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TelomericRepeat.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TelomericRepeat.class
diff --git a/...rata-homologs/build/classes/java/main/org/intermine/model/bio/TelomericRepeatShadow.class b/...rata-homologs/build/classes/java/main/org/intermine/model/bio/TelomericRepeatShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ThreePrimeUTR.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ThreePrimeUTR.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ThreePrimeUTRShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/ThreePrimeUTRShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Transcript.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Transcript.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TranscriptShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/TranscriptShadow.class
diff --git a/...ta-homologs/build/classes/java/main/org/intermine/model/bio/TransposableElementGene.class b/...ta-homologs/build/classes/java/main/org/intermine/model/bio/TransposableElementGene.class
diff --git a/...ologs/build/classes/java/main/org/intermine/model/bio/TransposableElementGeneShadow.class b/...ologs/build/classes/java/main/org/intermine/model/bio/TransposableElementGeneShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/UTR.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/UTR.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/UTRShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/UTRShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/W_region.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/W_region.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/W_regionShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/W_regionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/XElement.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/XElement.class
diff --git a/...omologs/build/classes/java/main/org/intermine/model/bio/XElementCombinatorialRepeat.class b/...omologs/build/classes/java/main/org/intermine/model/bio/XElementCombinatorialRepeat.class
diff --git a/...s/build/classes/java/main/org/intermine/model/bio/XElementCombinatorialRepeatShadow.class b/...s/build/classes/java/main/org/intermine/model/bio/XElementCombinatorialRepeatShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/XElementShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/XElementShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/X_region.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/X_region.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/X_regionShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/X_regionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/YPrimeElement.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/YPrimeElement.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/YPrimeElementShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/YPrimeElementShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Y_region.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Y_region.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Y_regionShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Y_regionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Z1_region.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Z1_region.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Z1_regionShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Z1_regionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Z2_region.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Z2_region.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Z2_regionShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/Z2_regionShadow.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/uORF.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/uORF.class
diff --git a/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/uORFShadow.class b/cglabrata-homologs/build/classes/java/main/org/intermine/model/bio/uORFShadow.class
diff --git a/cglabrata-homologs/build/gen/org/intermine/model/bio/ARS.java b/cglabrata-homologs/build/gen/org/intermine/model/bio/ARS.java
diff --git a/cglabrata-homologs/build/gen/org/intermine/model/bio/ARSConsensusSequence.java b/cglabrata-homologs/build/gen/org/intermine/model/bio/ARSConsensusSequence.java
diff --git a/cglabrata-homologs/build/gen/org/intermine/model/bio/ARSConsensusSequenceShadow.java b/cglabrata-homologs/build/gen/org/intermine/model/bio/ARSConsensusSequenceShadow.java
diff --git a/cglabrata-homologs/build/gen/org/intermine/model/bio/ARSShadow.java b/cglabrata-homologs/build/gen/org/intermine/model/bio/ARSShadow.java
diff --git a/cglabrata-homologs/build/gen/org/intermine/model/bio/Annotatable.java b/cglabrata-homologs/build/gen/org/intermine/model/bio/Annotatable.java
diff --git a/cglabrata-homologs/build/gen/org/intermine/model/bio/AnnotatableShadow.java b/cglabrata-homologs/build/gen/org/intermine/model/bio/AnnotatableShadow.java
diff --git a/cglabrata-homologs/build/gen/org/intermine/model/bio/Author.java b/cglabrata-homologs/build/gen/org/intermine/model/bio/Author.java