keys check to match old

cglabrata-homologs/build/resources/main/cglabrata-homologs_keys.properties

@@ -4,4 +4,4 @@ SOTerm.key = name, ontology
 Organism.key = taxonId
 Ontology.key = name
 Publication.key = pubMedId
-Gene.key=secondaryIdentifier
+Gene.key=secondaryIdentifier

cglabrata-homologs/src/main/resources/cglabrata-homologs_keys.properties

@@ -4,4 +4,4 @@ SOTerm.key = name, ontology
 Organism.key = taxonId
 Ontology.key = name
 Publication.key = pubMedId
-Gene.key=secondaryIdentifier
+Gene.key=secondaryIdentifier

cgob-homologs/src/main/resources/cgob-homologs_keys.properties

@@ -4,4 +4,4 @@ SOTerm.key = name, ontology
 Organism.key = taxonId
 Ontology.key = name
 Publication.key = pubMedId
-Gene.key=secondaryIdentifier
+Gene.key=secondaryIdentifier

ensembl-compara/src/main/resources/ensembl-compara_keys.properties

@@ -1,11 +1,8 @@
-DataSet.key_name = name
-DataSource.key_name = name
-SOTerm.key_name_ontology = name, ontology
-Organism.key_taxonid = taxonId
-Ontology.key_name = name
-Publication.key_pubmedid = pubMedId
+DataSet.key=name
+DataSource.key=name
+SOTerm.key=name, ontology
+Organism.key=taxonId
+Ontology.key=name
 Gene.key_primaryidentifier=primaryIdentifier
-OntologyTerm.key_name_ontology=name, ontology
 Gene.key_symbol=symbol, organism
 Gene.key_secondaryidentifier = secondaryIdentifier, organism
-

fungi-homologs/src/main/resources/fungi-homologs_keys.properties

@@ -4,4 +4,4 @@ SOTerm.key = name, ontology
 Organism.key = taxonId
 Ontology.key = name
 Publication.key = pubMedId
-Gene.key = secondaryIdentifier
+Gene.key = secondaryIdentifier

go-annotation-db/src/main/resources/go-annotation-db_keys.properties

@@ -9,4 +9,4 @@ Ontology.key_title=name
 GOEvidenceCode.key_code=code
 Publication.key_pubmed=pubMedId
 DataSet.key_title=name
-DataSource.key_name=name
+DataSource.key_name=name

go-slim/resources/go-slim_keys.properties

@@ -3,4 +3,4 @@ DataSet.key_title=name
 OntologyTerm.key_name_ontology=name, ontology
 OntologyTermSynonym.key = name, type
 DataSet.key_title=name
-DataSource.key_name=name
+DataSource.key_name=name

mgi-identifiers/src/main/resources/mgi-identifiers_keys.properties

@@ -1,9 +1,8 @@
-DataSet.key_name = name
-DataSource.key_name = name
-SOTerm.key_name_ontology = name, ontology
-Organism.key_taxonid = taxonId
-Ontology.key_name = name
-Publication.key_pubmedid = pubMedId
-Gene.key_symbol_org=symbol, organism
+DataSet.key_title=name
+DataSource.key_name=name
+Gene.key_symbol=symbol, organism
 Gene.key_primaryidentifier=primaryIdentifier
 Gene.key_secondaryidentifier=secondaryIdentifier
+Organism.key_taxon=taxonId
+SOTerm.key=name, ontology
+Ontology.key_title=name

ncbi-gene/src/main/resources/ncbi-gene_keys.properties

@@ -1,17 +1,9 @@
-DataSet.key_name = name
-DataSource.key_name = name
-SOTerm.key_name_ontology = name, ontology
-Organism.key_taxonid = taxonId
-Ontology.key_name = name
+DataSet.key=name
+DataSource.key=name
+SOTerm.key=name, ontology
+Ontology.key=name
+Organism.key=taxonId
+Gene.key=symbol, organism
 Gene.key_primaryIdentifier=primaryIdentifier
 NcRNA.key=symbol, organism
 Synonym.key_synonym=subject, value
-Gene.key=symbol, organism
-
-
-#DataSet.key=name
-#DataSource.key=name
-#SOTerm.key=name, ontology
-#Ontology.key=name
-#Organism.key=taxonId
-

omim/src/main/resources/omim_keys.properties

@@ -1,10 +1,10 @@
-DataSet.key_name = name
-DataSource.key_name = name
-SOTerm.key_name_ontology = name, ontology
-Organism.key_taxonid = taxonId
-Ontology.key_name = name
-Publication.key_pubmedid = pubMedId
+DataSet.key=name
+DataSource.key=name
+SOTerm.key=name, ontology
+Organism.key=taxonId
+#Gene.key_primaryIdentifier=primaryIdentifier
 Gene.key_symbol_org=symbol, organism
 Gene.key_primaryidentifier=primaryIdentifier
+Ontology.key=name
+Publication.key=pubMedId
 Disease.key=identifier
-

panther/src/main/resources/panther_keys.properties

@@ -1,10 +1,9 @@
-DataSet.key_name = name
-DataSource.key_name = name
-SOTerm.key_name_ontology = name, ontology
-Organism.key_taxonid = taxonId
-Ontology.key_name = name
-#Publication.key_pubmedid = pubMedId
+DataSet.key = name
+DataSource.key = name
+SOTerm.key = name, ontology
+Organism.key = taxonId
+Ontology.key = name
 Publication.key = pubMedId
 Gene.key_primaryidentifier=primaryIdentifier
 Gene.key_secondaryidentifier=secondaryIdentifier, organism
-Gene.key_symbol=symbol, organism
+Gene.key_symbol=symbol, organism

pombe-homologs/src/main/resources/pombe-homologs_keys.properties

@@ -4,4 +4,4 @@ SOTerm.key = name, ontology
 Organism.key = taxonId
 Ontology.key = name
 Publication.key = pubMedId
-Gene.key=secondaryIdentifier
+Gene.key=secondaryIdentifier

psi-complexes/src/main/resources/psi-complexes_keys.properties

@@ -1,6 +1,16 @@
-DataSet.key_name = name
-DataSource.key_name = name
-SOTerm.key_name_ontology = name, ontology
-Organism.key_taxonid = taxonId
-Ontology.key_name = name
-Publication.key_pubmedid = pubMedId
+DataSet.key_title=name
+DataSource.key_name=name
+Gene.key_primaryidentifier=primaryIdentifier
+Gene.key_secondaryidentifier=secondaryIdentifier
+Gene.key_symbol_org=symbol, organism
+#yes merge - kk;  no merging, I think.
+#Interaction.key_interaction=participant1, participant2
+InteractionTerm.key_identifier=identifier
+Ontology.key_title=name
+OntologyTerm.key_identifier=identifier
+OntologyTerm.key_name_ontology=name, ontology
+Organism.key_taxonid=taxonId
+Publication.key_pubmed=pubMedId
+ProteinDomain.key_identifier=primaryIdentifier
+#Protein.key_primaryacc=primaryAccession
+Protein.key_primaryidentifier=primaryIdentifier

psi-mi-ontology/resources/psi-mi-ontology_keys.properties

@@ -1,6 +1,3 @@
-DataSet.key_name = name
-DataSource.key_name = name
-SOTerm.key_name_ontology = name, ontology
-Organism.key_taxonid = taxonId
-Ontology.key_name = name
-Publication.key_pubmedid = pubMedId
+OntologyTerm.key_identifier=identifier
+OntologyTerm.key_name_ontology=name, ontology
+Ontology.key_title=name

rgd-identifiers/src/main/resources/rgd-identifiers_keys.properties

@@ -1,7 +1,6 @@
-DataSet.key_name = name
-DataSource.key_name = name
-SOTerm.key_name_ontology = name, ontology
-Organism.key_taxonid = taxonId
-Ontology.key_name = name
-Publication.key_pubmedid = pubMedId
-Gene.key_primaryidentifier=primaryIdentifier
+DataSet.key=name
+DataSource.key=name
+SOTerm.key=name, ontology
+Organism.key=taxonId
+Ontology.key=name
+Gene.key=primaryIdentifier

sgd-gff/src/main/resources/sgd-gff_keys.properties

@@ -6,4 +6,4 @@ DataSource.key = name
 SOTerm.key = name, ontology
 Organism.key = taxonId
 Ontology.key = name
-Publication.key = pubMedId
+Publication.key = pubMedId

sgd-protein-ntermini/src/main/resources/sgd-protein-ntermini_keys.properties

@@ -5,4 +5,4 @@ Organism.key = taxonId
 Ontology.key = name
 Publication.key = pubMedId
 Protein.key_secondaryidentifier = secondaryIdentifier
-OntologyTerm.key_identifier=identifier
+OntologyTerm.key_identifier=identifier

sgd/src/main/resources/sgd_keys.properties

@@ -5,6 +5,5 @@ Publication=key_pubmed
 ECOTerm.key=name, ontology
 Gene.key_primaryidentifier=primaryIdentifier
 Chromosome.key_primaryidentifier=primaryIdentifier
-#Protein.key_primaryacc=primaryAccession
 Protein.key_primaryidentifier=primaryIdentifier
 ProteinAbundance.key=abundance, treatment, assay

spell-expression/src/main/resources/spell-expression_keys.properties

@@ -5,4 +5,4 @@ DataSource.key = name
 SOTerm.key = name, ontology
 Organism.key = taxonId
 Ontology.key = name
-Publication.key = pubMedId
+Publication.key = pubMedId

treefam/src/main/resources/treefam_keys.properties

@@ -1,16 +1,10 @@
-DataSet.key_name = name
-DataSource.key_name = name
-SOTerm.key_name_ontology = name, ontology
-Organism.key_taxonid = taxonId
-Ontology.key_name = name
 Gene.key_primaryidentifier=primaryIdentifier
 Gene.key_secondaryidentifier=secondaryIdentifier, organism
 Gene.key_symbol=symbol, organism
 Organism.key_taxonid=taxonId
-Ontology.key_title=name
-#DataSet.key_title=name
+DataSet.key_title=name
+DataSource.key_name=name
 OrthologueEvidenceCode.key_code=abbreviation
-#DataSet.key_title=name
 SOTerm.key=name, ontology
 Ontology.key_title=name
-
+#Gene.key_symbol_org=symbol, organism