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@BorgwardtLab

Machine Learning and Systems Biology Research Department

MLSB Department at the MPI of Biochemistry, Martinsried, Germany

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  1. TOGL TOGL Public

    Topological Graph Neural Networks (ICLR 2022)

    Python 124 26

  2. SAT SAT Public

    Official Pytorch code for Structure-Aware Transformer.

    Python 259 40

Repositories

Showing 10 of 114 repositories
  • CellPick Public

    An interactive cell selection tool for spatial omics

    BorgwardtLab/CellPick’s past year of commit activity
    Python 2 BSD-3-Clause 0 0 0 Updated Oct 29, 2025
  • AutoGraph Public

    Official code for "Flatten Graphs as Sequences: Transformers are scalable graph generators"

    BorgwardtLab/AutoGraph’s past year of commit activity
    Python 9 BSD-3-Clause 0 0 0 Updated Oct 17, 2025
  • polygraph-benchmark Public

    Benchmarking framework for graph generative models

    BorgwardtLab/polygraph-benchmark’s past year of commit activity
    Python 4 BSD-3-Clause 0 0 0 Updated Oct 14, 2025
  • orbit-count Public

    Python bindings for ORCA (ORbit Counting Algorithm)

    BorgwardtLab/orbit-count’s past year of commit activity
    C++ 1 GPL-3.0 0 0 0 Updated Oct 12, 2025
  • rnaglib-experiments Public
    BorgwardtLab/rnaglib-experiments’s past year of commit activity
    Python 1 0 0 0 Updated Oct 7, 2025
  • Human_scDVP_data_dashboard Public

    Data dashboard accompanying the manuscript "Single cell spatial proteomics maps human liver zonation patterns and their vulnerability to disruption in tissue architecture"

    BorgwardtLab/Human_scDVP_data_dashboard’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Oct 1, 2025
  • esm3_on_raven Public

    Code and guide for distributed embedding generation using ESM‑3 on the MPCDF Raven GPUs.

    BorgwardtLab/esm3_on_raven’s past year of commit activity
    Python 0 0 0 0 Updated Jul 31, 2025
  • PCR-bias Public
    BorgwardtLab/PCR-bias’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 0 0 0 Updated Jul 28, 2025
  • NeuralWalker Public

    Official Pytorch implementation of NeuralWalker (ICLR 2025)

    BorgwardtLab/NeuralWalker’s past year of commit activity
    Python 36 BSD-3-Clause 2 0 0 Updated Jun 25, 2025
  • bioverse Public
    BorgwardtLab/bioverse’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Jun 24, 2025
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