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@IGVF

Impact of Genomic Variation on Function (IGVF)

The IGVF Consortium aims to understand how genomic variation affects genome function, which in turn impacts phenotype.

IGVF Github Organization

This organization contains repositories for specifications and workflows used by the IGVF consortium.

Participation in this organization is subject to adherance to the IGVF code of conduct.

Popular repositories Loading

  1. atomic-workflows atomic-workflows Public

    Workflows for pre-processing sequencing data from sequence census assays

    Jupyter Notebook 7 2

  2. seqspec seqspec Public

    6 1

  3. datasets datasets Public

    Datasets related to the IGVF workflows

    2 1

  4. single-cell-pipeline single-cell-pipeline Public

    IGVF single-cell pipeline developed by the 'Single-cell Focus Group' to uniformly process single-cell multi-omic datasets.

    Python 2 1

  5. single-cell-annotation single-cell-annotation Public

    This is the repo for the 5 tiger teams involved in the single-cell annotations

    2

  6. .github .github Public

Repositories

Showing 10 of 10 repositories
  • atomic-workflows Public

    Workflows for pre-processing sequencing data from sequence census assays

    Jupyter Notebook 7 MIT 2 0 0 Updated Apr 17, 2025
  • single-cell-pipeline Public

    IGVF single-cell pipeline developed by the 'Single-cell Focus Group' to uniformly process single-cell multi-omic datasets.

    Python 2 MIT 1 0 1 Updated Mar 26, 2025
  • rigvf Public

    R Interface to the Impact of Genomic Variation on Function ('IGVF') Data Portal

    R 0 MIT 0 3 0 Updated Mar 19, 2025
  • igvf-data-collect Public

    collect analysis-sets and per-sample information from igvf portal

    Python 0 0 0 0 Updated Feb 27, 2025
  • single-cell-annotation Public

    This is the repo for the 5 tiger teams involved in the single-cell annotations

    2 MIT 0 0 0 Updated Jan 16, 2025
  • .github Public
    0 BSD-2-Clause 0 0 0 Updated Sep 22, 2024
  • seqspec Public
    6 1 0 0 Updated Sep 9, 2024
  • catalog-back-end-issues Public

    Dummy repo for issue tracking

    0 0 0 0 Updated Jun 6, 2024
  • catalog-front-end-issues Public

    Dummy repo for issue tracker

    0 0 10 0 Updated Jun 6, 2024
  • datasets Public

    Datasets related to the IGVF workflows

    2 1 0 0 Updated Oct 10, 2022