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@IGVF Impact of Genomic Variation on Function (IGVF)

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    10 repositories

    • single-cell-pipeline

      Public
      IGVF single-cell pipeline developed by the 'Single-cell Focus Group' to uniformly process single-cell multi-omic datasets.
      Python
      •
      MIT License
      •1•2•0•1•Updated Mar 26, 2025Mar 26, 2025

    • rigvf

      Public
      R Interface to the Impact of Genomic Variation on Function ('IGVF') Data Portal
      R
      •
      MIT License
      •0•0•3•0•Updated Mar 19, 2025Mar 19, 2025

    • atomic-workflows

      Public
      Workflows for pre-processing sequencing data from sequence census assays
      Jupyter Notebook
      •
      MIT License
      •2•7•0•0•Updated Mar 14, 2025Mar 14, 2025

    • igvf-data-collect

      Public
      collect analysis-sets and per-sample information from igvf portal
      Python
      •0•0•0•0•Updated Feb 27, 2025Feb 27, 2025

    • single-cell-annotation

      Public
      This is the repo for the 5 tiger teams involved in the single-cell annotations
      MIT License
      •0•2•0•0•Updated Jan 16, 2025Jan 16, 2025

    • .github

      Public
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Sep 22, 2024Sep 22, 2024

    • seqspec

      Public
      1•6•0•0•Updated Sep 9, 2024Sep 9, 2024

    • catalog-back-end-issues

      Public
      Dummy repo for issue tracking
      0•0•0•0•Updated Jun 6, 2024Jun 6, 2024

    • catalog-front-end-issues

      Public
      Dummy repo for issue tracker
      0•0•10•0•Updated Jun 6, 2024Jun 6, 2024

    • datasets

      Public
      Datasets related to the IGVF workflows
      1•2•0•0•Updated Oct 10, 2022Oct 10, 2022