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Pull requests: NVIDIA/bionemo-framework

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Pull requests list

CI hotfix: NGC access INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline INCLUDE_SLOW_TESTS Add unit tests marked as slow to CI pipeline
#683 opened Feb 7, 2025 by dorotat-nv Loading…
4 of 9 tasks
@dorotat-nv
3
draft: adding FIXME/XFAIL issue linter to pre commit hook SKIP_CI Completely skips the CI pipeline
#681 opened Feb 6, 2025 by dorotat-nv Loading…
1 of 9 tasks
remove development target, install all packages in postcreatecommand
#679 opened Feb 5, 2025 by pstjohn Loading…
3
support arbitrary metric logging from torchmetrics
#677 opened Feb 5, 2025 by sichu2023 Loading…
1 task done
@sichu2023
25
Add model and tokenizer smoke tests
#673 opened Jan 31, 2025 by pstjohn • Draft
7
Add initial amplify package structure
#672 opened Jan 31, 2025 by pstjohn Loading…
2
Patchfix ARM rsync vulnerability in container, bump release version.
#663 opened Jan 28, 2025 by trvachov Loading…
5 of 9 tasks
3
Possible changes for biobert config changes
#655 opened Jan 24, 2025 by pstjohn • Draft
1
ESM2 Interactive inference
#654 opened Jan 24, 2025 by farhadrgh • Draft
9 tasks
9
AMPLIFY Mega-PR
#640 opened Jan 22, 2025 by pstjohn • Draft
2
tflops callback and flag: ESM2
#633 opened Jan 22, 2025 by dorotat-nv Loading…
1 of 9 tasks
@dorotat-nv
Loss disagreement between TP=1 and TP=2 bug Something isn't working
#631 opened Jan 22, 2025 by sichu2023 • Draft
1 of 5 tasks
@sichu2023
5
Add .codecov.yml status checks
#618 opened Jan 17, 2025 by pstjohn Loading…
3
docs: Add myself to docs CODEOWNERS SKIP_CI Completely skips the CI pipeline
#616 opened Jan 16, 2025 by jwilber • Draft
run notebook tests automatically if any notebooks have changed
#615 opened Jan 16, 2025 by pstjohn Loading…
9 tasks
6
Simplify BIONEMO_HOME env var setting in ci scripts.
#608 opened Jan 15, 2025 by shoobieieiee Loading…
9 tasks
2
add check for duplicate actions
#607 opened Jan 15, 2025 by pstjohn Loading…
9 tasks
Add extra echoes during docker build in CI
#583 opened Jan 8, 2025 by trvachov Loading…
2 of 11 tasks
6
add weight decay
#564 opened Jan 1, 2025 by sichu2023 Loading…
2
[DO NOT REVIEW AS A PR] little example of how we might use nemo-run for handling SLURM
#536 opened Dec 16, 2024 by skothenhill-nv • Draft
clean up distributed env setup and support multi-device testing INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline INCLUDE_SLOW_TESTS Add unit tests marked as slow to CI pipeline
#535 opened Dec 16, 2024 by sichu2023 Loading…
@sichu2023
16
Re-opens Conda-Based Compatibility Test Images
#518 opened Dec 9, 2024 by skothenhill-nv Loading…
@malcolmgreaves
2
wip - Mg/pytorch source builds
#506 opened Dec 6, 2024 by malcolmgreaves • Draft
5 tasks
[Draft] Unify inference interface - request for comments
#505 opened Dec 6, 2024 by skothenhill-nv Loading…
7
single Numpy array option
#503 opened Dec 5, 2024 by polinabinder1 • Draft
7
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