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rachadele wants to merge 10 commits intomainPavlidisLab/sc-annotation-pipeline:mainfrom developmentPavlidisLab/sc-annotation-pipeline:developmentCopy head branch name to clipboard

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Commits on Feb 15, 2025

• remove cell filtering for mouse

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• enable passing organ parameter

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• add default organ

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• rename CNS macrophage to general macrophage

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• rename mmus VLMC cells to general VLMC cells

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• rename cortical interneuron to corticothalamic (might have to change this later

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Commits on Feb 19, 2025

• add ontology for VLMC

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• add rename file and hardcode into script

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• add rename file as config parameter

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  41be9c3

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• fix ontology mapping

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