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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 136 46

Repositories

Showing 10 of 110 repositories
  • vpipe-biohack24-frontend Public

    Cloudification of V-Pipe: Frontend for the Biohackathon 2024

    cbg-ethz/vpipe-biohack24-frontend’s past year of commit activity
    Python 0 MIT 0 4 1 Updated Apr 17, 2025
  • Jnotype Public

    Probabilistic modeling of high-dimensional binary data in JAX

    cbg-ethz/Jnotype’s past year of commit activity
    Python 3 0 6 2 Updated Apr 17, 2025
  • WisePulse Public

    WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.

    cbg-ethz/WisePulse’s past year of commit activity
    Rust 1 MIT 0 5 0 Updated Apr 17, 2025
  • oncotreeVIS Public

    An interactive graphical user interface for visualizing mutation tree cohorts.

    cbg-ethz/oncotreeVIS’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Apr 15, 2025
  • tupro-evolutionary-landscapes Public
    cbg-ethz/tupro-evolutionary-landscapes’s past year of commit activity
    Python 0 0 0 0 Updated Apr 15, 2025
  • oncotree2vec Public

    A method for embedding and clustering of tumor mutation trees.

    cbg-ethz/oncotree2vec’s past year of commit activity
    Python 8 0 0 0 Updated Apr 15, 2025
  • RSV-wastewater-V-pipe Public

    Wastewater-derived Respiratory Syncytial Virus data analysis

    cbg-ethz/RSV-wastewater-V-pipe’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Apr 14, 2025
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin’s past year of commit activity
    Shell 7 3 1 0 Updated Apr 14, 2025
  • sr2silo Public

    Wrangling short-read sequencing data for import into SILO

    cbg-ethz/sr2silo’s past year of commit activity
    Python 1 MIT 0 13 0 Updated Apr 14, 2025
  • V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    cbg-ethz/V-pipe’s past year of commit activity
    Jupyter Notebook 136 Apache-2.0 46 34 (4 issues need help) 3 Updated Apr 9, 2025
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