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Collaboration Tools#47

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maarzt wants to merge 76 commits intomastermastodon-sc/mastodon-tomancak:masterfrom collaboration-toolsmastodon-sc/mastodon-tomancak:collaboration-toolsCopy head branch name to clipboard

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Commits

Commits on Sep 21, 2023

• Add classes to simplify the API for creating a Mastodon menu entry.

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• Add plugin for uploading a Mastodon project to github / gitlab

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• Add basic command to clone repository and open dataset

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• BasicMamutPlugin: make WindowManager and MamutAppModel accessible

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• Add git commit plugin

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• Mastodon Git: move SciJava commands to a separate package

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• MastodonGit: remove unnecessary MastodonGitCommit class

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• Mastodon Git: implement push on create branch commands

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• MastodonGitUtils: don't unnecessary save the project

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• Mastodon Git: add switch branch plugin

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Commits on Sep 22, 2023

• Simplify the computation of max non empty time point in the merge Dataset

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  maarzt

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• Mastodon Git: implement merge command based on the exiting merge tool

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• Mastodon Git: add pull and reset commands

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• Add TODO

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Commits on Sep 27, 2023

• Mastodon Git: add commit graph example

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• MastodonGitUtils: refactoring

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  maarzt

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• Mastodon Git: shuffle menu entries

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• Mastodon Git: allow to switch to remote only branch

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Commits on Sep 28, 2023

• Add class that asks for username and password once

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Commits on Oct 2, 2023

• Rename MastodonGitUtils and MastodonGitPlugins

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• Introduce a MastodonGitRepository object per Mastodon instance

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• Mastodon Git: rename menu entries

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• Mastodon Git share project / clone project: add checkbox create new subdir

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• MastodonGitNewBranch: better title

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• MastodonGit: fix title for the reset command

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• POM: remove duplicated dependency

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• Mastodon Git: let the user know if credentials where wrong

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Commits on Oct 6, 2023

• Example on using SSH certificate in non standard location.

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• MastodonGitCloneRepository: Add descriptions

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• Mastodon Git: fix merge for projects where the image data is not available

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• MastodonGitRepository: small refactoring

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• MastodonGitController: make switch branch also perform a git fetch

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• MastodonGitRepository: fix exception message

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Commits on Oct 10, 2023

• Mastodon Git: allow to specify author, email and message used in commits

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• Mastodon Git: add a cancel button to the commands

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• Mastodon Git: remove dead code

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Commits on Oct 17, 2023

• Mastodon Git: ask for author name

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• Mastodon Git: disable git related commands if not in a git repository

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• Mastodon Git: fix typo

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• Mastodon Git: don't initialize repository when sharing a project

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• Mastodon Git: use text area in the commit command

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Commits on Oct 18, 2023

• Mastodon Git: fix reset command, to undo changes on disc

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• Mastodon Git: let the pull command perform an automatic merge if possible

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• Mastodon Git: reuse code for normal merge and pull merge

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• Add plugin to fix graph inconsistencies

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• Mastodon Git: don't reset project.xml, gui.xml during merge abort

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• Mastodon Git: tweak UI texts

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• Mastodon Git: use gitignore for gui.xml, project.xml etc.

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Commits on Oct 19, 2023

• Mastodon Git: show a dialog if there is an exception

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• Mastodon Git: inform user about an failed push

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• Mastodon Git: make sure the repo is clean before, switch, pull & merge

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• Mastodon Git: let the SettingsService implement ImageJService

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• Mastodon Git: use JGit version that still support Java8

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Commits on Oct 20, 2023

• Mastodon Git: show success notification on push

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Commits on Oct 22, 2023

• Mastodon Git: add show branch name command

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Commits on Oct 23, 2023

• Mastodon Git: add synchronize menu item

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• MastodonGitController: fix code formatting

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Commits on Nov 9, 2023

• PersistentCredentials: fix typo

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  maarzt

  and

  stefanhahmann

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• Refactor PersistentCredentials

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Commits on Nov 10, 2023

• Mastodon Git: clicking cancel on username, password dialog is handled better

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• Mastodon Git: improve error message in NewDirectoryUtils

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• Mastodon Git: fix typo

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• Mastodon Git: include stack traces in the error message dialog

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Commits on Nov 13, 2023

• MastodonGitRepository: improve exceptions

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• MastodonGitRepository: remove unused code

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• Mastodon Git: refactor the dialogues

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• MastodonGitController: move the TODO notes into a github issue

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• MastodonGitController: make the command identifiers more user-friendly

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• CommitMessageDialog: remove unused parameter

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• MastodonGitController: improve descriptions

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• Remove MastodonGitCommitCommand

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• Mastodon Git: rename Fiji menu entry for downloading a shared project

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• Mastodon Git: make parameter private and final if possible

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• Clean up BasicMamutPlugin and BasicDescriptionProvider

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• Mastodon Git: add javadoc

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Commits on Nov 14, 2023

• Mastodon Git: rename menu entry to "Collaborative (Git)"

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