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Compute checksum for each input file - #31

Merged
delfiterradas merged 6 commits into
nf-core:devfrom
delfiterradas:checksum_modules
Jun 16, 2026
Merged

delfiterradas merged 6 commits into
nf-core:devfrom
delfiterradas:checksum_modules

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@delfiterradas

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Closes #30:

  • Install md5sum module
  • Install shasum module
  • Compute checksum for each input file
  • Update samplesheet
  • Update test

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/datasync branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@delfiterradas delfiterradas self-assigned this Jun 16, 2026

@atrigila atrigila left a comment

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Good first implementation. We will iterate on this so that it can accept an s3 directory and a checksum tsv.
Please add changelog to this one. Thanks!

@delfiterradas
delfiterradas merged commit b02e7f6 into nf-core:dev Jun 16, 2026
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@delfiterradas delfiterradas mentioned this pull request Aug 20, 2026
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Compute checksum for each input file

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