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create and apply test dataset - #33

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antoniasaracco merged 35 commits into
nf-core:devfrom
antoniasaracco:create_test_dataset
Jun 23, 2026
Merged

antoniasaracco merged 35 commits into
nf-core:devfrom
antoniasaracco:create_test_dataset

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@antoniasaracco

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This closes #23

@antoniasaracco antoniasaracco self-assigned this Jun 18, 2026
@antoniasaracco
antoniasaracco requested a review from atrigila June 18, 2026 03:13

@atrigila atrigila left a comment

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Left some comments on how to structure the new samplesheet. Do not forget to update the changelog as well.

Comment thread conf/test_full.config Outdated
Comment thread tests/default.nf.test.snap
Comment thread assets/samplesheet_full.csv
Comment thread workflows/datasync.nf Outdated
Comment thread conf/test_full.config Outdated
Comment thread assets/checksum.md5 Outdated

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This one should not be here as your hcanges should only be related to the demux/test full

Comment thread assets/samplesheet.csv

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This one should not be changed as your changes are only related to the test_full

Comment thread tests/main_full.nf.test.snap Outdated
Comment on lines +20 to +33
"multiqc/multiqc_data",
"multiqc/multiqc_data/llms-full.txt",
"multiqc/multiqc_data/multiqc.log",
"multiqc/multiqc_data/multiqc.parquet",
"multiqc/multiqc_data/multiqc_citations.txt",
"multiqc/multiqc_data/multiqc_data.json",
"multiqc/multiqc_data/multiqc_software_versions.txt",
"multiqc/multiqc_data/multiqc_sources.txt",
"multiqc/multiqc_report.html",
"pipeline_info",
"pipeline_info/nf_core_datasync_software_mqc_versions.yml",
"shasum",
"shasum/human_grch38_sequence.sha256",
"shasum/test_fastq.sha256"

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This doesn't seem to be the content of the demux pipeline, right?

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Add changelog please before merging.

@antoniasaracco
antoniasaracco merged commit 689a157 into nf-core:dev Jun 23, 2026
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Add test dataset

3 participants