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Update biocontainers/cnvkit Docker tag to v0.9.12 #7418

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Update biocontainers/cnvkit Docker tag to v0.9.12 #7418

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2 changes: 1 addition & 1 deletion modules/nf-core/cnvkit/access/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ process CNVKIT_ACCESS {
conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/cnvkit:0.9.10--pyhdfd78af_0':
'biocontainers/cnvkit:0.9.10--pyhdfd78af_0' }"
'biocontainers/cnvkit:0.9.12--pyhdfd78af_0' }"

input:
tuple val(meta), path(fasta)
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2 changes: 1 addition & 1 deletion modules/nf-core/cnvkit/antitarget/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ process CNVKIT_ANTITARGET {
conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/cnvkit:0.9.11--pyhdfd78af_0':
'biocontainers/cnvkit:0.9.11--pyhdfd78af_0' }"
'biocontainers/cnvkit:0.9.12--pyhdfd78af_0' }"

input:
tuple val(meta), path(targets)
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2 changes: 1 addition & 1 deletion modules/nf-core/cnvkit/call/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ process CNVKIT_CALL {
conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/cnvkit:0.9.10--pyhdfd78af_0':
'biocontainers/cnvkit:0.9.10--pyhdfd78af_0' }"
'biocontainers/cnvkit:0.9.12--pyhdfd78af_0' }"

input:
tuple val(meta) , path(cns), path(vcf)
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2 changes: 1 addition & 1 deletion modules/nf-core/cnvkit/export/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ process CNVKIT_EXPORT {
conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/cnvkit:0.9.10--pyhdfd78af_0':
'biocontainers/cnvkit:0.9.10--pyhdfd78af_0' }"
'biocontainers/cnvkit:0.9.12--pyhdfd78af_0' }"

input:
tuple val(meta), path(cns)
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2 changes: 1 addition & 1 deletion modules/nf-core/cnvkit/genemetrics/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ process CNVKIT_GENEMETRICS {
conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/cnvkit:0.9.10--pyhdfd78af_0':
'biocontainers/cnvkit:0.9.10--pyhdfd78af_0' }"
'biocontainers/cnvkit:0.9.12--pyhdfd78af_0' }"

input:
tuple val(meta), path(cnr), path(cns)
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2 changes: 1 addition & 1 deletion modules/nf-core/cnvkit/reference/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ process CNVKIT_REFERENCE {
conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/cnvkit:0.9.11--pyhdfd78af_0':
'biocontainers/cnvkit:0.9.11--pyhdfd78af_0' }"
'biocontainers/cnvkit:0.9.12--pyhdfd78af_0' }"

input:
path fasta
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2 changes: 1 addition & 1 deletion modules/nf-core/cnvkit/target/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ process CNVKIT_TARGET {
conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/cnvkit:0.9.10--pyhdfd78af_0':
'biocontainers/cnvkit:0.9.10--pyhdfd78af_0' }"
'biocontainers/cnvkit:0.9.12--pyhdfd78af_0' }"

input:
tuple val(meta), path(baits)
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