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pgleeson committed May 28, 2024
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon.cell.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon">
<notes>A cell from Nicoletti et al. 2019</notes>
<include href="AWCon_leak.channel.nml"/>
<include href="AWCon_nca.channel.nml"/>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_bk.channel.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_bk">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_bk">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_bk" species="k" conductance="10pS">
<notes>AWCon_bk channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_bk2.channel.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_bk2">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_bk2">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_bk2" species="k" conductance="10pS">
<notes>AWCon_bk2 channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_cca.channel.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_cca">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_cca">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_cca" species="ca" conductance="10pS">
<notes>AWCon_cca channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_egl19.channel.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_egl19">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_egl19">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_egl19" species="ca" conductance="10pS">
<notes>AWCon_egl19 channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_egl2.channel.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_egl2">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_egl2">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_egl2" species="k" conductance="10pS">
<notes>AWCon_egl2 channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_kir.channel.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_kir">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_kir">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_kir" species="k" conductance="10pS">
<notes>AWCon_kir channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_kqt3.channel.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_kqt3">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_kqt3">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_kqt3" species="k" conductance="10pS">
<notes>AWCon_kqt3 channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_kvs1.channel.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_kvs1">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_kvs1">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_kvs1" species="k" conductance="10pS">
<notes>AWCon_kvs1 channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_leak.channel.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_leak">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_leak">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_leak" species="non_specific" conductance="10pS">
<notes>AWCon_leak channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_nca.channel.nml
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_nca">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_nca">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_nca" species="non_specific" conductance="10pS">
<notes>AWCon_nca channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_shak.channel.nml
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@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_shak">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_shak">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_shak" species="k" conductance="10pS">
<notes>AWCon_shak channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_shal.channel.nml
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@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_shal">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_shal">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_shal" species="k" conductance="10pS">
<notes>AWCon_shal channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_sk.channel.nml
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@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_sk">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_sk">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_sk" species="k" conductance="10pS">
<notes>AWCon_sk channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_slo1.channel.nml
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@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_slo1">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_slo1">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_slo1" species="k" conductance="10pS">
<notes>AWCon_slo1 channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_slo2.channel.nml
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@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_slo2">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_slo2">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_slo2" species="k" conductance="10pS">
<notes>AWCon_slo2 channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/AWCon_unc2.channel.nml
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@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AWCon_unc2">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AWCon_unc2">
<notes>An ion channel from cell AWCon from Nicoletti et al. 2019</notes>
<ionChannelHH id="AWCon_unc2" species="ca" conductance="10pS">
<notes>AWCon_unc2 channel from Nicoletti et al. 2019</notes>
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3 changes: 1 addition & 2 deletions NeuroML2/GenerateExamples.py
Original file line number Diff line number Diff line change
Expand Up @@ -83,11 +83,10 @@ def generate(cell, config, parameters=None):


if __name__ == "__main__":

sim, net = generate("AWCon", config="Fig4C")

check_to_generate_or_run(sys.argv, sim)

sim, net = generate("RMD", config="Fig7B")

check_to_generate_or_run(sys.argv, sim)
23 changes: 12 additions & 11 deletions NeuroML2/GenerateNeuroML.py
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Expand Up @@ -437,6 +437,18 @@ def create_cells(channels_to_include, duration=700, stim_delay=310, stim_duratio
seg_type="soma",
)

cell.add_membrane_property("SpikeThresh", value="0mV")

cell.set_specific_capacitance(
"%s F_per_m2"
% (float(xpps[cell_id]["parameters"]["c"]) / surface_area_curved)
)

cell.set_init_memb_potential("-70mV")

# This value is not really used as it's a single comp cell model
cell.set_resistivity("0.1 kohm_cm")

density_factor = 1000 / surface_area_curved

# Leak channel
Expand Down Expand Up @@ -1121,17 +1133,6 @@ def create_cells(channels_to_include, duration=700, stim_delay=310, stim_duratio
),
)

cell.set_specific_capacitance(
"%s F_per_m2"
% (float(xpps[cell_id]["parameters"]["c"]) / surface_area_curved)
)

cell.add_membrane_property("SpikeThresh", value="0mV")
cell.set_init_memb_potential("-70mV")

# This value is not really used as it's a single comp cell model
cell.set_resistivity("0.1 kohm_cm")

cell_doc.includes.append(IncludeType(href="CaDynamics.nml"))
# <species id="ca" ion="ca" concentrationModel="CaDynamics" initialConcentration="1e-4 mM" initialExtConcentration="2 mM"/>
species = component_factory(
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2 changes: 1 addition & 1 deletion NeuroML2/IClamp_RMD.net.nml
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@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="IClamp_RMD">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="IClamp_RMD">
<notes>Generated by NeuroMLlite v0.5.9
Generated network: IClamp_RMD
Generation seed: 1234
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2 changes: 1 addition & 1 deletion NeuroML2/LEMS_Sim_IClamp_RMD.xml
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Expand Up @@ -2,7 +2,7 @@

<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
This LEMS file has been automatically generated using PyNeuroML v1.2.15 (libNeuroML v0.6.0)
-->

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2 changes: 1 addition & 1 deletion NeuroML2/RMD.cell.nml
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@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="RMD">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="RMD">
<notes>A cell from Nicoletti et al. 2019</notes>
<include href="RMD_leak.channel.nml"/>
<include href="RMD_nca.channel.nml"/>
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2 changes: 1 addition & 1 deletion NeuroML2/RMD_bk.channel.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="RMD_bk">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="RMD_bk">
<notes>An ion channel from cell RMD from Nicoletti et al. 2019</notes>
<ionChannelHH id="RMD_bk" species="k" conductance="10pS">
<notes>RMD_bk channel from Nicoletti et al. 2019</notes>
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2 changes: 1 addition & 1 deletion NeuroML2/RMD_bk2.channel.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="RMD_bk2">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="RMD_bk2">
<notes>An ion channel from cell RMD from Nicoletti et al. 2019</notes>
<ionChannelHH id="RMD_bk2" species="k" conductance="10pS">
<notes>RMD_bk2 channel from Nicoletti et al. 2019</notes>
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