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@CNIC-Proteomics Proteomics at the Spanish National Center of Cardiovascular Research

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    59 repositories

    • nf-SearchEngine

      Public
      nf-SearchEngine is a Nextflow pipeline that executes the MSFragger search engine for the peptide identification.
      Groovy
      •
      Other
      •0•1•0•0•Updated Mar 10, 2025Mar 10, 2025

    • nf-PTM-compass

      Public
      nf-PTM-compass is a Nextflow pipeline that enhances the identification and quantification of Post-Translational Modifications (PTMs).
      Groovy
      •
      Other
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • ReFrag

      Public
      Recom rebuilt for MSFragger
      Python
      •
      Other
      •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

    • PTM-GPS

      Public
      PTM-GPS (An application for running the Post-iSanXoT workflow for PTM analysis)
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • nf-PTM-Analyzer

      Public
      nf-PTM-Analyzer is a Nextflow pipeline that executes the ReportAnalysis programs.
      Groovy
      •
      Other
      •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • nf-modules

      Public
      Modules for nextflow pipelines
      Nextflow
      •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • ReportAnalysis

      Public
      Scripts for Report Analysis
      JavaScript
      •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • PTM-compass

      Public
      PTM-compass workflow
      Python
      •
      Other
      •0•0•0•0•Updated Feb 27, 2025Feb 27, 2025

    • PTM-Button

      Public
      GUI to run the PTM workflow of Jesús Vázquez's laboratory
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

    • iSanXoT

      Public
      Stand-alone application that executes workflows for quantitative high-throughput proteomics, systems biology and the statistical analysis, integration and comparison of experiments, based on SanXoT integrations.
      workflowproteomics
      Python
      •
      Other
      •1•2•0•1•Updated Feb 26, 2025Feb 26, 2025

    • next-Launcher

      Public
      next-Laucher is a system that execute Nextflow pipelines: backend and frontend systems
      Dockerfile
      •0•0•0•0•Updated Feb 22, 2025Feb 22, 2025

    • FragQuant

      Public
      A tool to run MSFragger and extract TMT quantification data
      Apache License 2.0
      •0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

    • TurboPutative-web

      Public
      metabolomicslc-msdata-processinguntargeted-metabolomics
      HTML
      •
      Other
      •0•0•0•0•Updated Feb 10, 2025Feb 10, 2025

    • nf-test

      Public
      Nextflow pipeline for testing
      Groovy
      •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

    • TurboPutative-2

      Public
      C++
      •
      Other
      •0•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • Cl-Open

      Public
      Cl-Open is a program that allowa make Open and Closed shearches with Comet and MSFragger, and improve the outputs of any OpenSearch with ones from ClosedSearch
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • SearchToolkit

      Public
      Python
      •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • bioDataHub

      Public
      Scripts that create databases used by iSanXoT
      Python
      •0•0•0•0•Updated Jan 29, 2025Jan 29, 2025

    • TurboOmics

      Public
      Web-based platform for multi-omics analysis of metabolomics data implemented in TurboPutative
      JavaScript
      •
      Other
      •1•1•0•0•Updated Jan 21, 2025Jan 21, 2025

    • next-Launcher-app

      Public
      Web application for the next-Launcher system
      CSS
      •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • nextflow-api

      Public
      Nextflow-API is a web application and REST API for submitting and monitoring Nextflow pipelines on a variety of execution environments.
      Python
      •
      MIT License
      •0•2•0•0•Updated Dec 17, 2024Dec 17, 2024

    • pyVseq

      Public
      Vseq rebuilt in Python
      Python
      •
      Other
      •1•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • TrackHubs

      Public
      Python
      •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • Solvers-PTMap

      Public
      Python
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • SHIFTS

      Public
      SHIFTS is a battery of programs for high-throughput PTM (Post Translational Modifications) processing. SHIFTS identifies peaks in the Delta Mass distribution, assigns PSMs to peaks, and calculates FDR for peptide identification.
      Python
      •3•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • fetchCMM

      Public
      JavaScript
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • SANPRO

      Public
      The programs for the iSanXoT results
      Python
      •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • Multiomics-pipeline

      Public
      Set of Jupyter Notebooks, scripts and libraries to perform the multiomics integration.
      Jupyter Notebook
      •0•0•0•0•Updated Nov 14, 2023Nov 14, 2023

    • sanREST

      Public
      A RESTful API that describes the web services and the operations for the report files of iSanXoT.
      CSS
      •0•0•0•0•Updated Oct 31, 2023Oct 31, 2023

    • DBCleaner

      Public
      Python
      •0•0•0•0•Updated Dec 12, 2022Dec 12, 2022