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ENH: Make Raven format work for BirdNET Live output, fix #301 #302

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ENH: Make Raven format work for BirdNET Live output, fix #301 #302

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fd1bc02
ENH: Make Raven format work for BirdNet output, fix #301
NickleDave Oct 9, 2026
af7f7d4
TST: Use pandera `SchemaErrors` (plural) to fix failures
NickleDave Oct 9, 2026
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4 changes: 2 additions & 2 deletions src/crowsetta/formats/bbox/raven.py
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Expand Up @@ -25,8 +25,8 @@ class RavenSchema(pandera.pandas.DataFrameModel):

begin_time_s: Series[float] = pandera.pandas.Field()
end_time_s: Series[float] = pandera.pandas.Field()
low_freq_hz: Series[float] = pandera.pandas.Field()
high_freq_hz: Series[float] = pandera.pandas.Field()
low_freq_hz: Series[float] = pandera.pandas.Field(coerce=True)
high_freq_hz: Series[float] = pandera.pandas.Field(coerce=True)
annotation: Series[pd.StringDtype] = pandera.pandas.Field(coerce=True)

class Config:
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2 changes: 1 addition & 1 deletion tests/test_formats/test_bbox/test_audbbox.py
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Expand Up @@ -53,7 +53,7 @@ def test_raven_schema_bad_df(self, an_audbbox_path):
# if we just load the csv directly, it will be invalid
df = pd.read_csv(an_audbbox_path, sep="\t", header=None)

with pytest.raises(pandera.errors.SchemaError):
with pytest.raises(pandera.errors.SchemaErrors):
crowsetta.formats.bbox.audbbox.AudBBoxSchema.validate(df)


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2 changes: 1 addition & 1 deletion tests/test_formats/test_seq/test_audseq.py
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Expand Up @@ -22,7 +22,7 @@ def test_audseq_schema_bad_df(self, an_audseq_path):
audseq_df = pd.read_csv(an_audseq_path, sep="\t", header=None)
# notice: wrong column name 'stop_time'
audseq_df.columns = ["start_time", "stop_time", "label"]
with pytest.raises(pandera.errors.SchemaError):
with pytest.raises(pandera.errors.SchemaErrors):
crowsetta.formats.seq.audseq.AudSeqSchema.validate(audseq_df)


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4 changes: 2 additions & 2 deletions tests/test_formats/test_seq/test_generic.py
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Expand Up @@ -62,7 +62,7 @@ def test_missing_column_raises(self, csv_missing_fields_in_header):
def test_invalid_column_raises(self, csv_with_invalid_fields_in_header):
"""test that invalid column name 'invalid' raises a schema error"""
invalid_df = pd.read_csv(csv_with_invalid_fields_in_header)
with pytest.raises(pandera.errors.SchemaError):
with pytest.raises(pandera.errors.SchemaErrors):
crowsetta.formats.seq.generic.GenericSeqSchema.validate(invalid_df)

def test_onset_s_with_no_offset_s_raises(self, csv_with_onset_s_but_no_offset_s):
Expand Down Expand Up @@ -378,7 +378,7 @@ def test_csv2annot_missing_fields_raises(self, csv_missing_fields_in_header):
crowsetta.formats.seq.generic.csv2annot(csv_path=csv_missing_fields_in_header)

def test_csv2annot_invalid_fields_raises(self, csv_with_invalid_fields_in_header):
with pytest.raises(pandera.errors.SchemaError):
with pytest.raises(pandera.errors.SchemaErrors):
crowsetta.formats.seq.generic.csv2annot(csv_path=csv_with_invalid_fields_in_header)


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2 changes: 1 addition & 1 deletion tests/test_formats/test_seq/test_simple.py
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Expand Up @@ -22,7 +22,7 @@ def test_simple_seq_schema_bad_df(self, a_simple_csv_path):
simple_df = pd.read_csv(a_simple_csv_path)
# notice: wrong column names
simple_df.columns = ["text", "begin_sample", "end_sample"]
with pytest.raises(pandera.errors.SchemaError):
with pytest.raises(pandera.errors.SchemaErrors):
simple_df = crowsetta.formats.seq.simple.SimpleSeqSchema.validate(simple_df)


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2 changes: 1 addition & 1 deletion tests/test_formats/test_seq/test_timit.py
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Expand Up @@ -19,7 +19,7 @@ def test_timit_schema_bad_df(self, a_transcript_path):
phn_df = pd.read_csv(a_transcript_path, sep=" ", header=None)
# notice: wrong column names
phn_df.columns = ["text", "begin_sample", "end_sample"]
with pytest.raises(pandera.errors.SchemaError):
with pytest.raises(pandera.errors.SchemaErrors):
phn_df = crowsetta.formats.seq.timit.TimitTranscriptSchema.validate(phn_df)


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