Skip to content

Actions: centre-for-microbiome-research/hpc_scripts

Actions

All workflows

Actions

Loading...
Loading

Showing runs from all workflows
46 workflow runs
46 workflow runs

Filter by Event

Filter by Status

Filter by Branch

Filter by Actor

add conda --prefix param to mcreate
check hpc_script #72: Commit af88a17 pushed by sternp
September 19, 2024 00:03 14s main
September 19, 2024 00:03 14s
Update $PATH for recurm-v0.3.0
check hpc_script #71: Commit 4e07a12 pushed by sternp
August 27, 2024 00:21 13s main
August 27, 2024 00:21 13s
adjust CPU and MEM warnings
check hpc_script #70: Commit d7706f7 pushed by sternp
August 11, 2024 23:35 12s main
August 11, 2024 23:35 12s
Adjust mqstat to account for WEKA using 4 CPU
check hpc_script #69: Commit 0d08938 pushed by sternp
July 18, 2024 22:41 4h 42m 36s main
July 18, 2024 22:41 4h 42m 36s
reverse crontab change
check hpc_script #68: Commit 29b656a pushed by sternp
May 1, 2024 03:53 12s main
May 1, 2024 03:53 12s
Add biobank rsync to crontab
check hpc_script #67: Commit 5d6b351 pushed by sternp
May 1, 2024 03:36 11s main
May 1, 2024 03:36 11s
Merge pull request #16 from centre-for-microbiome-research/snake_config
check hpc_script #66: Commit 5943186 pushed by sternp
April 22, 2024 04:51 18s main
April 22, 2024 04:51 18s
Merge branch 'main' into snake_config
check hpc_script #65: Commit 131e54d pushed by wwood
April 22, 2024 04:33 18s snake_config
April 22, 2024 04:33 18s
Merge pull request #20 from centre-for-microbiome-research/snakemake_…
check hpc_script #64: Commit c89edf0 pushed by sternp
March 13, 2024 21:45 23s main
March 13, 2024 21:45 23s
snakemake_configs: Incorporate snakemake 8 configs.
check hpc_script #63: Commit 955c7f3 pushed by wwood
March 13, 2024 21:32 19s snakemake_mem_mb_fix
March 13, 2024 21:32 19s
snakemake_mqsub: Handle when mem_mb is missing in snakemake v8.
check hpc_script #62: Commit 3070167 pushed by wwood
March 13, 2024 21:19 14s snakemake_mem_mb_fix
March 13, 2024 21:19 14s
ssh config example: Adjust for lyra-mb.
check hpc_script #61: Commit 569c9d8 pushed by wwood
March 7, 2024 06:01 14s main
March 7, 2024 06:01 14s
ssh config example: Adjust for lyra-mb.
check hpc_script #60: Commit a675343 pushed by wwood
March 7, 2024 04:37 12s lyra-mb
March 7, 2024 04:37 12s
mperms, bs, bash_extras
check hpc_script #59: Commit 3fdce88 pushed by sternp
February 23, 2024 05:21 16s main
February 23, 2024 05:21 16s
Merge pull request #18 from centre-for-microbiome-research/oldpwd_return
check hpc_script #58: Commit 86c5360 pushed by sternp
February 23, 2024 05:06 16s main
February 23, 2024 05:06 16s
cmr_bashrc_extras: Return to OLDPWD not $HOME.
check hpc_script #57: Commit ce26bbe pushed by wwood
February 18, 2024 21:25 13s oldpwd_return
February 18, 2024 21:25 13s
cmr_bashrc_extras: Return to OLDPWD not $HOME.
check hpc_script #56: Commit 6ec8990 pushed by wwood
February 18, 2024 21:24 20s oldpwd_return
February 18, 2024 21:24 20s
add queue nodes to disk report on ssh
check hpc_script #55: Commit e57d195 pushed by sternp
November 29, 2023 03:37 13s main
November 29, 2023 03:37 13s
add queue nodes to disk report on ssh
check hpc_script #54: Commit d5356ef pushed by sternp
November 29, 2023 03:34 13s main
November 29, 2023 03:34 13s
add explanation for exist_ok
check hpc_script #53: Commit 5709afa pushed by wwood
September 8, 2023 05:42 13s main
September 8, 2023 05:42 13s
snakemake: profiles: Set rerun-incomplete.
check hpc_script #52: Commit df58138 pushed by wwood
September 6, 2023 20:38 14s main
September 6, 2023 20:38 14s
mqsub: Fix regression.
check hpc_script #51: Commit 9697c6c pushed by wwood
August 28, 2023 05:46 16s main
August 28, 2023 05:46 16s
mqsub: Do not default to microbiome conda env.
check hpc_script #50: Commit 747f262 pushed by wwood
August 28, 2023 05:21 16s main
August 28, 2023 05:21 16s
snakemake_configs: Add local, apply rerun-incomplete.
check hpc_script #49: Commit 7dfb2c1 pushed by wwood
August 22, 2023 08:22 16s snake_config
August 22, 2023 08:22 16s
example.smk: Add new file.
check hpc_script #48: Commit c1fc408 pushed by wwood
August 21, 2023 04:50 13s main
August 21, 2023 04:50 13s